Job Description P54746 Confidence 49.33% Date Thu Jan 5 12:06:04 GMT 2012 Rank 43 Aligned Residues 190 % Identity 7% Template c3blcB_ PDB info PDB header:chaperone,protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: crystal structure of the periplasmic domain of the escherichia coli2 yidc Resolution 2.50 Å

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		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500		.	.	.	.	.		.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.												.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure																			.						.																																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.						.																																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	D	A	E	G	I	L	E	N	A	F	W	Q	I	A	L	N	.	E	D	G	S	L	.	Q	L	V	D	K	D	S	G	V	R	Y	D	R	V	L	Q	I	E	E	S	S	D	D	G	D	E	Y	D	Y	S	P	A	K	.	.	.	.	.	.	.	.	.	.	.	E	E	W	V	I	T	A	A	N	A	K	P
Query Conservation																			.						.																																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.						.																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	G	K	L	I	S	V	K	T	D	V	L	D	L	T	I	N	T	R	G	G	D	V	E	Q	A	L	L	P	A	Y	P	K	E	L	N	S	T	Q	P	F	Q	L	L	E	T	S	P	Q	F	I	Y	Q	A	Q	S	G	L	T	G	R	D	G	P	D	N	P	A	N	G	P	R	P	L	Y	N	V	E	K	D
Template Known Secondary structure											S	S							T	B	T													S	S	T	T		S	S				S	S				S	S											S	T	T		T	T	S	G	G	G		S			B		B		S		S
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.						.	.	.	620	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.
Query Sequence		Q	C	D	I	I	H	E	A	W	Q	S	R	A	V	I	R	Y	D	M	A	V	P	L	N	L	S	E	R	S	A	R	Q	S	T	G	R	V	G	V	V	L	V	V	T	L	S	H	N	S	R	R	I	D	V	D	I	N	L	D	N	Q	A	D	D	H	R	.	.	.	.	.	L	R	V	L	V	P	T	P	F
Query Conservation																																																																				.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Y	V	L	A	E	G	Q	N	E	L	Q	V	P	X	T	Y	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	G	N	T	F	T	K	T	F	V	L	K	R	G	D	Y	A	V	N	V	N	Y	N	V	Q	N	A	G	E	K	P	L	E	I	S	S	F	G	Q	L	K	Q	S	I	T	L
Template Known Secondary structure							T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S											T	T														S	S	S														S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.															.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		626	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	D	S	V	L	A	D	T	Q	F	G	S	L	T	R	P	V	N	D	S	A	M	N	N	W	Q	Q	E	G	W	K	E	A	P	V	P	V	W	N	M	L	N	Y	V	A	L	Q	E	G	R	N	G	M	A	V	F	S	E	G	L	R	E	F	E	V
Query Conservation
Alig confidence																																								.	.	.	.
Template Conservation																																								.	.	.	.
Template Sequence		P	P	H	L	T	F	R	G	A	A	Y	S	T	P	D	A	A	Y	A	A	Y	A	F	D	T	I	A	D	N	E	N	L	N	I	S	S	K	G	.	.	.	.	G	W	V	A	X	L	Q	Q	Y	F	A	T	A	W	I	P	H	N	D	G	T	N	N	F
Template Known Secondary structure															T	T													T	T								S	S	.	.	.	.								T	T										S	S
Template Predicted Secondary structure																																								.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions