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Job DescriptionP54746
Confidence49.33%DateThu Jan 5 12:06:04 GMT 2012
Rank43Aligned Residues190
% Identity7%Templatec3blcB_
PDB info PDB header:chaperone,protein transportChain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: crystal structure of the periplasmic domain of the escherichia coli2 yidc
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   484.....490.........500 ..... ....510.........520.........530........ .540.........550
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Query Sequence  SDAEGILENAFWQIALN. EDGSL. QLVDKDSGVRYDRVLQIEESSDDGDEYDYSPAK. . . . . . . . . . . EEWVITAANAKP
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Template Sequence  QGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKD
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B
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   57..60.........70.........80.........90.........100.........110.........120.........130......
 
   551........560.........570.........580.........590.........600.........610...... ...620.....
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Query Sequence  QCDIIHEAWQSRAVIRYDMAVPLNLSERSARQSTGRVGVVLVVTLSHNSRRIDVDINLDNQADDHR. . . . . LRVLVPTPF
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Template Sequence  AYVLAEGQNELQVPXTYTD. . . . . . . . . . . . . . AAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITL
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   137..140.........150..... ....160.........170.........180.........190.........200..
 
   626...630.........640.........650.........660.........670.........680.........690.
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Query Sequence  NTDSVLADTQFGSLTRPVNDSAMNNWQQEGWKEAPVPVWNMLNYVALQEGRNGMAVFSEGLREFEV
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Template Sequence  PPHLTFRGAAYSTPDAAYAAYAFDTIADNENLNISSKG. . . . GWVAXLQQYFATAWIPHNDGTNNF
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TT
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   203......210.........220.........230.........240 .........250.........260....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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