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Job DescriptionP54746
Confidence100.00%DateThu Jan 5 12:06:04 GMT 2012
Rank4Aligned Residues821
% Identity15%Templatec2ow7A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:alpha-mannosidase 2; PDBTitle: golgi alpha-mannosidase ii complex with (1r,6s,7r,8s)-1-2 thioniabicyclo[4.3.0]nonan-7,8-diol chloride
Resolution1.77 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20......... 30.........40.........50.........60.........70.........80
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Query Sequence  KAVSRVHITPHMHWDREWYFTTEESRIL. LVNNMEEILCRLEQDNEYKYYVLDGQTAILEDYFAVKPENKDRVKKQVEAG
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Template Sequence  HHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKF. IWAEISYFARFYHDLGENKKLQMKSIVKNG
Template Known Secondary structure  TB


SSSSS
T
TT

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TTS
TT
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   78.80.........90.........100.........110.........120...... ...130.........140.........150......
 
   81... .....90.........100.........110.... .....120.........130.........140.........150........
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Query Sequence  KLII. GPWYTQTDTTIVSAESIVRNLMYGMRDCLA. FGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGT
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Template Sequence  QLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKE
Template Known Secondary structure  SSS

SS
B
SSS

T





SSSSB
TTTT





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   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   159160...... ...170......... 180.........190.. .......200
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Query Sequence  . . . . DKTEFLWQ. . . . SSDGSEVTAQVLP. LGYAIGKYLPADE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . NGLRKRLD
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Template Sequence  LAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSD
Template Known Secondary structure  TT
S

TT
SS
TT


SS
SSGGGTSSS
GGG
GGGSSTTS


TTS






TTT
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   237..240.........250.........260.........270.........280.........290.........300.........310......
 
   201........210. ........220......... 230.........240.. .......250.........260.. ..
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Query Sequence  SYFDVLEKASV. . . TKEILLPNGHDQMPLQQN. . . . . . . . IFEVMDKLREIYP. QRKFVMSRFEEVFEKIEAQR. . . . DN
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Template Sequence  LLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAE
Template Known Secondary structure  TTSSSST
S
S
GGG


TTS

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   317..320.........330.........340.........350.........360.........370.........380.........390......
 
   265....270......... 280.........290.........300.........310.........320.........330.........340..
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Query Sequence  LATLKGEFIDGKYMR. . VHRTIGSTRMDIKIAHARIENKIVNLLEPLATLAWTLGFEYHHGLLEKMWKEILKNHAHDSIG
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Template Sequence  FPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYV. RAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGIT
Template Known Secondary structure 

S
B
S
BSSTT
B

GGGTSS.TS


GGG
TBTTTTT
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   397..400.........410.........420.........430...... ...440.........450.........460.........470.....
 
   343......350.........360.........370......... 380.......
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Query Sequence  CCCSDKVHREIVARFELAEDMADNLIRFYMRKIADNM. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PQSDADKL
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Template Sequence  GTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDSRWPGSGVEDSRTTIILGEDILPSKHV
Template Known Secondary structure  S
S
TB
TTT



TTS
S
STTTTTTT






BTTTB
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   476...480.........490.........500.........510.........520.........530.........540.........550.....
 
   388.390.........400.........410.........420.........430.........440.........450.........460.......
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Query Sequence  VLFNLMPWPREEVINTTVRLRASQFNLRDDRGQPVPYFIRHAREIDPGLIDRQIVHYGNYDPFMEFDIQINQIVPSMGYR
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Template Sequence  VMHNTLPHWREQLVDFYV. . SSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIH. . . PQGSTTKYRIIFKARVPPMGLA
Template Known Secondary structure 
SSS
..S
S
TT


TTTT...
TT
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   556...560.........570... ......580.........590.........600........ .610.........620.........630
 
   468.470.........480... ......490.........500 ..... ....510.........520
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Query Sequence  TLYIEANQPGNVIAAK. . . . . . . . . . . . . . . . . . . . . . . . . SDAEGILENAFWQIALN. EDGSL. QLVDKDSGVRYDRVL
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Template Conservation   
 
                                           


       
   
 
 

  
  
       
Template Sequence  TYVLTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHF
Template Known Secondary structure 
SS

TT

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TT
SS


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TTS

TTS

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   631........640.........650.........660.........670.........680.........690.........700.........710
 
   521........ 530.........540.........550.........560.........570.........580.........590.....
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Query Sequence  QIEESSDDG. . . . . DEYDYSPAKEEWVITAANAKPQCDIIHEAWQSRAVIRYDMAVPLNLSERSARQSTGRVGVVLVVTL
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Template Sequence  KFLKYGVRSHGDRSGAYLFLPNGPASP. . VELGQPVVLVTKGKLESSVSV. . . . . . . . . . . . . . . . . . . GLPSVVHQTIM
Template Known Secondary structure 


SSS



SS



SSS
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S


SS
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   711........720.........730....... ..740.........750........ .760.........
 
   596...600.........610 .........620.........630.........640.........650.........660.........670....
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Query Sequence  SHNSRRIDVDINLDN. QADDHRLRVLVPTPFNTDSVLADTQFGSLTRPVNDSAMNNWQQEGWKEAPVPVWNMLNYVALQE
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Template Sequence  RGGAPEIRNLVDIGSLDNTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKLPL. . . . . . . . . . QANYYPIPSGMFIED
Template Known Secondary structure  SSSS


TT
TT



TTTTT

TTS
G..........GGG
SS
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   770.........780.........790.........800.........810.........820.... .....830.........
 
   675....680.........690.........700.........710.........720... ......730.........740....
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Query Sequence  GRNGMAVFSEGLREFEVIGEEKKTFAITLLRGVGLLGKEDLLLRPGRPS. . . . . . . . . . GIKMPVPDSQLRGLLSCRLSL
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Template Sequence  ANTRLTLLTGQPLGGSSL. . ASGELEIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVLEKVNNCVRPS. KLHPAGYLTS
Template Known Secondary structure  SSSS


..STTBSS

SSS

S
B





TTS



.TT
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   840.........850....... ..860.........870.........880.........890.........900...... ...910......
 
   745....750.........760.........770.........780.........790.........800.........810.. .......820...
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Query Sequence  LSYTGTPTAAGVAQQARAWLTPVQCYNKIPWDVMKLNKAGFNVPESYSLLKMPPVGCLISALKKAEDR. QEVILRLFNPA
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Template Sequence  AAH. . . . . . . . . . KASQSLLDPLDKFIFAENEWIGAQGQFGGDHPS. . . AREDLDVSVMRRLTKSSAKTQRVGYVLHRTN
Template Known Secondary structure  ..........S


SS

TTB
S
TTS

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TT
S
TT
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   917.. 920.........930.........940.........950.. .......960.........970.........980...
 
   824.....830... ......840.........850.........860.........870.......
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Query Sequence  ESATCDATVA. . . . . . . . FSREVISCSETMMDEHITTEENQGSNLSGPFLPGQSRTFSYRLA
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Template Sequence  LMQCGTPEEHTQKLDVCHLLPNVARCERTTLTF. LQNLEHLDGMVAPEVCPMETAAYVSSHS
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S









GGGSSSS
TTS.
S
GGG





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   984.....990.........1000.........1010...... ...1020.........1030.........1040....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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