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Job DescriptionP54746
Confidence97.12%DateThu Jan 5 12:06:04 GMT 2012
Rank24Aligned Residues165
% Identity18%Templatec2c1iA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:peptidoglycan glcnac deacetylase; PDBTitle: structure of streptococcus pnemoniae peptidoglycan2 deacetylase (sppgda) d 275 n mutant.
Resolution1.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   35....40.........50.........60.........70.........80...... ...90.........100.........110...
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Query Sequence  EEILCRLEQDNEYKYYVLDGQTAILEDYFAVKPENKDRVKKQVEAGKLIIGP. WYTQTDTTIVSAESIVRNLMYGMRDCL
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Template Sequence  PQVLETLAKYDIKATFFVLGK. . . . . . NVSGNE. . . DLVKRIKSEG. HVVGNHSWSHPILSQLSLDEAKKQITDTEDVLT
Template Known Secondary structure  TT



GG......GTTT
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GGGS
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   284.....290.........300.... .....310 .........320 .........330.........340.........350...
 
   114 .....120.........130.........140.........150.........160.........170.........180.........190..
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Query Sequence  A. FGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDKTEFLWQSSDGSEVTAQVLPLGYAIGKYLPADE
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Template Sequence  KVLGSSSKLMRPP. . YGAITD. . DIRNSLDLSF. IMWDVDSLD. . . . . . . . . WKSKN. . . . . . . . . . . . . . . . . . . . . . .
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   354.....360...... ...370.. .......380.. .......390. .....
 
   193......200.........210.........220.........230.........240.........250.......
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Query Sequence  NGLRKRLDSYFDVLEKASVTKEILLPNGHDQMPLQQNIFEVMDKLREIYPQRKFVMSRFEEVFEK
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Template Sequence  . . . . . . EASILTEIQHQVANGSIVLMH. DIHSPTVNALPRVIEYLKNQG. . . . YTFVTIPEMLNT
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TT.TTSTT....


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   397..400.........410....... ..420.........430........ .440.........450
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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