Job Description P54746 Confidence 99.96% Date Thu Jan 5 12:06:04 GMT 2012 Rank 9 Aligned Residues 251 % Identity 12% Template c1o7dD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:lysosomal alpha-mannosidase; PDBTitle: the structure of the bovine lysosomal a-mannosidase2 suggests a novel mechanism for low ph activation Resolution 2.70 Å

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		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.		.	.	.	.		.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.							.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure																		.					.																								.	.	.	.	.	.
Query SS confidence																		.					.																								.	.	.	.	.	.
Query Sequence		A	E	G	I	L	E	N	A	F	W	Q	I	A	L	N	E	.	D	G	S	L	.	Q	L	V	D	K	D	S	G	V	R	Y	D	R	V	L	Q	I	E	E	S	S	D	D	.	.	.	.	.	.	G	D	E	Y	D	Y	S	P	A	K	E	E	W	V	I	T	A	A	N	A	K	P	Q	C	D	I	I	H	E
Query Conservation																		.					.																								.	.	.	.	.	.
Alig confidence																		.					.																								.	.	.	.	.	.													.	.
Template Conservation																																																																	.	.
Template Sequence		R	D	L	V	I	Q	N	E	Y	L	R	A	R	F	D	P	N	T	G	L	L	M	E	L	E	N	L	L	L	L	P	V	R	Q	A	F	Y	W	Y	N	A	S	T	G	N	N	L	S	S	Q	A	S	G	A	Y	I	F	R	P	N	Q	N	K	.	.	P	L	F	V	S	H	W	A	Q	T	H	L	V	K	A
Template Known Secondary structure									S	S							T	T	T		S																					B				B	T	T	B	S					S	S				B	S	S	S	S	.	.				S		S
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		603	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.			.	.	.	.	670	.	.	.	.	.	.	.	.	.	680
		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.					.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
Predicted Secondary structure																																																								.	.	.	.
Query SS confidence																																																								.	.	.	.
Query Sequence		A	W	Q	S	R	A	V	I	R	Y	D	M	A	V	P	L	N	L	S	E	R	S	A	R	Q	S	T	G	R	V	G	V	V	L	V	V	T	L	S	H	N	S	R	R	I	D	V	D	I	N	L	D	N	Q	.	.	.	.	A	D	D	H	R	L	R	V	L	V	P	T	P	F	N	T	D	S	V	L	A	D
Query Conservation																																																								.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	V	Q	E	V	H	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	A	W	C	S	Q	V	V	R	L	Y	P	R	Q	R	H	L	E	L	E	W	T	V	G	P	I	P	V	G	D	G	W	G	K	E	V	I	S	R	F	D	T	A	L	A	T	R	G	L	F	Y	T
Template Known Secondary structure		S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T									T	T		S	S													T	T	S																T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		684	.	.	.	.	.	690	.	.																			.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.
		634	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	F	G	S	L	T	R	P	V	N	D	S	A	M	N	N	W	Q	Q	E	G	W	K	E	A	P	V	P	V	W	N	M	L	N	Y	V	A	L	Q	E	G	R	N	G	M	A	V	F	S	E	G	L	R	E	F	E	V	I	G	E	E	K	K	T	F	A	I	T	L	L	R	G	V	G	L	L	G	K	E
Query Conservation
Alig confidence																																																													.	.
Template Conservation																																																													.	.
Template Sequence		D	S	N	G	R	E	I	L	E	R	R	R	N	Y	R	P	T	W	K	L	N	Q	T	E	P	V	A	G	N	Y	Y	P	V	N	S	R	I	Y	I	T	D	G	N	M	Q	L	T	V	L	T	D	R	S	Q	G	G	S	S	L	.	.	R	D	G	S	L	E	L	M	V	H	R	R	L	L	K	D	D	A	R
Template Known Secondary structure			S	T	T	S	S						T	T			S	S	S					S		T	T	G	G	G					S	S							S	S								S	S							S	.	.	S	T	T											S	S			S	S
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		746	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.			.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.
		714	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.				.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760		.	.	.	.	.	.	.	.	.	770	.
Predicted Secondary structure																										.	.	.																								.
Query SS confidence																										.	.	.																								.
Query Sequence		D	L	L	L	R	P	G	R	P	S	G	I	K	M	P	V	P	D	S	Q	L	R	G	L	.	.	.	L	S	C	R	L	S	L	L	S	Y	T	G	T	P	T	A	A	G	V	A	Q	Q	A	.	R	A	W	L	T	P	V	Q	C	Y	N
Query Conservation																										.	.	.																								.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.																								.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	G	E	P	L	N	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	G	L	W	V	R	G	R	H	L	V	L	L	D	K	K	E	T	A	A	A	R	H	R	L	Q	A	E	M	E	V	L	A	P	Q	V	V	L	A
Template Known Secondary structure		S			S		S				.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G	S																												S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		824	.	.	.	.	.	830	.	.														.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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