Job Description P54746 Confidence 99.94% Date Thu Jan 5 12:06:04 GMT 2012 Rank 11 Aligned Residues 131 % Identity 11% Template c1o7dC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:lysosomal alpha-mannosidase; PDBTitle: the structure of the bovine lysosomal a-mannosidase2 suggests a novel mechanism for low ph activation Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380																		.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	K	M	W	K	E	I	L	K	N	H	A	H	D	S	I	G	C	C	C	S	D	K	V	H	R	E	I	V	A	R	F	E	L	A	E	D	M	A	D	N	L	I	R	F	Y	M	R	K	I	A	D	N	M	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	D	A	D	K	L
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	P	L	N	E	A	M	A	V	L	Q	H	H	D	A	V	S	G	T	S	R	Q	H	V	A	N	D	Y	A	R	Q	L	S	E	G	W	R	P	C	E	V	L	M	S	N	A	L	A	H	L	S	G	L	K	E	D	F	A	F	C	R	K	L	N	I	S	I	C	P	L	T	Q	T	A	E	R	F	Q	V
Template Known Secondary structure		S										T	T	S	T	T	T	T	T			S																																			S						T	T	G	G	G	T									S
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	F	N	L	M	P	W	P	R	E	E	V	I	N	T	T	V	R	L	R	A	S	Q	F	N	L	R	D	D	R	G	Q	P	V	P	Y	F	I	R	H	A	R	E	I	D	P	G	L	I	D	R	Q	I	V	H	Y	G	N	Y	D	P	F	M	E	F	D	I	Q	I	N	Q	I	V	P	S	M	G	Y	R
Query Conservation
Alig confidence																				.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	Y	N	P	L	G	R	K	V	D	W	M	V	R	L	P	V	.	.	S	K	H	V	Y	L	V	K	D	P	G	G	K	I	V	P	S	D	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	P	S	S	D	S	Q	E	L	L	F	S	A	L	V	P	A	V	G	F	S
Template Known Secondary structure							S	S	S											.	.		S	S							S	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T	T												T	T
Template Predicted Secondary structure																				.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530			.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550																			.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.
		468	.	470	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	Y	I	E	A	N	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Y	S	V	S	Q	M	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		577	.	.	580	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions