Job Description P54746 Confidence 100.00% Date Thu Jan 5 12:06:04 GMT 2012 Rank 6 Aligned Residues 237 % Identity 21% Template c1o7dA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:lysosomal alpha-mannosidase; PDBTitle: the structure of the bovine lysosomal a-mannosidase2 suggests a novel mechanism for low ph activation Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.										.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.
Query Sequence		K	A	V	S	R	V	H	I	T	P	H	M	H	W	D	R	E	W	Y	F	T	T	E	E	S	R	I	.	.	.	.	.	.	.	.	.	L	L	V	N	N	M	E	E	I	L	C	R	L	E	Q	D	N	E	Y	K	Y	Y	V	L	D	G	Q	T	A	I	L	E	D	Y	F	A	V	K	P	E	N	K	D	R
Query Conservation																													.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.																						.
Template Conservation																																																											.
Template Sequence		P	D	M	L	N	V	H	L	V	P	H	T	H	D	D	V	G	W	L	K	T	V	D	Q	Y	F	Y	G	I	Y	N	N	I	Q	P	A	G	V	Q	Y	I	L	D	S	V	I	S	S	L	L	A	N	P	T	R	R	F	.	I	Y	V	E	I	A	F	F	S	R	W	W	R	Q	Q	T	N	A	T	Q	K	I
Template Known Secondary structure		S	S	S								B		B			S	S	S	S	S								T			T	T	T																				T	T				.														T	S
Template Predicted Secondary structure																																																											.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure														.																															.				.	.
Query SS confidence														.																															.				.	.
Query Sequence		V	K	K	Q	V	E	A	G	K	L	I	I	.	G	P	W	Y	T	Q	T	D	T	T	I	V	S	A	E	S	I	V	R	N	L	M	Y	G	M	R	D	C	L	A	.	F	G	E	.	.	P	M	K	I	G	Y	L	P	D	S	F	G	M	S	G	Q	L	P	H	I	Y	N	G	F	G	I	T	R	T	M	F
Query Conservation														.																															.				.	.
Alig confidence														.																															.				.	.
Template Conservation
Template Sequence		V	R	E	L	V	R	Q	G	R	L	E	F	A	N	G	G	W	V	M	N	D	E	A	T	T	H	Y	G	A	I	I	D	Q	M	T	L	G	L	R	F	L	E	E	T	F	G	S	D	G	R	P	R	V	A	W	H	I	D	P	F	G	H	S	R	E	Q	A	S	L	F	A	Q	M	G	F	D	G	F	F	F
Template Known Secondary structure								T	T	S				S	S		S	S	S				S	S	S																						G	G	G	G			S					S	S	S	S	S													T
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		149	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.						.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.																			.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure									.	.	.	.													.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.													.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	R	G	C	S	E	R	.	.	.	.	H	G	T	D	K	T	E	F	L	W	Q	S	.	.	.	.	.	S	D	G	S	E	V	T	A	Q	V	L	P	L	G	Y	A	I	G	K	Y	L	P	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	G	L	R	K	R	L	D	S
Query Conservation									.	.	.	.													.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.													.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	R	L	D	Y	Q	D	K	K	V	R	K	K	T	L	Q	M	E	Q	V	W	R	A	S	T	S	L	K	P	P	T	A	D	L	F	T	S	V	L	P	N	M	Y	N	P	P	E	G	L	C	W	D	M	L	C	A	D	K	P	V	V	E	D	T	R	S	P	E	Y	N	A	K	E	L	V	R	Y	F	L	K
Template Known Secondary structure		S													T	T		S								S	S	S		T	T	T	T								S	S	T	T	S			T	T				S	T	T										T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.						.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.
Query SS confidence																													.	.	.	.	.
Query Sequence		Y	F	D	V	L	E	K	A	S	V	T	K	E	I	L	L	P	N	G	H	D	Q	M	P	L	Q	Q	.	.	.	.	.	N	I	F	E	V	M	D	K	L	R	E
Query Conservation																													.	.	.	.	.
Alig confidence																													.	.	.	.	.
Template Conservation
Template Sequence		L	A	T	D	Q	G	K	L	Y	R	T	K	H	T	V	M	T	M	G	S	D	F	Q	Y	E	N	A	N	T	W	F	K	N	L	D	K	L	I	Q	L	V	N	A
Template Known Secondary structure								T	T	S	S	S	S									B	T			T	T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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