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Job DescriptionP54746
Confidence100.00%DateThu Jan 5 12:06:04 GMT 2012
Rank3Aligned Residues828
% Identity14%Templatec1htyA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:alpha-mannosidase ii; PDBTitle: golgi alpha-mannosidase ii
Resolution1.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20......... 30.........40.........50.........60.........70.........80
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Query Sequence  KAVSRVHITPHMHWDREWYFTTEESRIL. LVNNMEEILCRLEQDNEYKYYVLDGQTAILEDYFAVKPENKDRVKKQVEAG
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Template Sequence  HHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEXKF. IWAEISYFARFYHDLGENKKLQXKSIVKNG
Template Known Secondary structure  TB


SSSSS
T
TT

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TT
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   78.80.........90.........100.........110.........120...... ...130.........140.........150......
 
   81... .....90.........100.........110.... .....120.........130.........140.........150........
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Query Sequence  KLII. GPWYTQTDTTIVSAESIVRNLMYGMRDCLA. FGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGT
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Template Sequence  QLEFVTGGWVXPDEANSHWRNVLLQLTEGQTWLKQFXNVTPTASWAIDPFGHSPTXPYILQKSGFKNMLIQRTHYSVKKE
Template Known Secondary structure  SSS

SS
B
SSS

T






SSSB
TTTT





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   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   159160...... ...170......... 180.........190. ........200
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Query Sequence  . . . . DKTEFLWQ. . . . SSDGSEVTAQVLP. LGYAIGKYLPAD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . ENGLRKRLD
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Template Sequence  LAQQRQLEFLWRQIWDNKGDTALFTHXXPFYSYDIPHTCGPDPKVCCQFDFKRXGSFGLSCPWKVPPRTISDQNVAARSD
Template Known Secondary structure  TT
S

TT
SS
TT


SS
SSGGGTSSS
GGG
TT
SSTTS


TTS






TTT
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   237..240.........250.........260.........270.........280.........290.........300.........310......
 
   201........210. ........220......... 230.........240.. .......250.........260. ...
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Query Sequence  SYFDVLEKASV. . . TKEILLPNGHDQMPLQQN. . . . . . . . IFEVMDKLREIYP. QRKFVMSRFEEVFEKIEAQ. . . . RDN
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Template Sequence  LLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAE
Template Known Secondary structure  TTSSSST
S
S
GGG


TTS

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   317..320.........330.........340.........350.........360.........370.........380.........390......
 
   265....270......... 280.........290.........300.........310.........320.........330.........340..
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Query Sequence  LATLKGEFIDGKYMR. . VHRTIGSTRMDIKIAHARIENKIVNLLEPLATLAWTLGFEYHHGLLEKMWKEILKNHAHDSIG
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Template Sequence  FPTLSGDFFTYADRSDNYWSGYYTSRPYHKRXDRVLXHYV. RAAEXLSAWHSWDGMARIEERLEQARRELSLFQHHDGIT
Template Known Secondary structure 

S
B
S
BSSTT
B

GGGTSS.TS


GGG
TBTTTTT
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   397..400.........410.........420.........430...... ...440.........450.........460.........470.....
 
   343......350.........360.........370.........380. ......
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Query Sequence  CCCSDKVHREIVARFELAEDMADNLIRFYMRKIADNMPQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SDADKL
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Template Sequence  GTAKTHVVVDYEQRXQEALKACQXVXQQSVYRLLTKPSIYSPDFSFSYFTLDDSRWPGSGVEDSRTTIILGEDILPSKHV
Template Known Secondary structure  S
S
TB
TTT



TTS
S
STTTTTTT


S


BTTTBS
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   476...480.........490.........500.........510.........520.........530.........540.........550.....
 
   388.390.........400.........410.........420.........430.........440.........450.........460.......
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Query Sequence  VLFNLMPWPREEVINTTVRLRASQFNLRDDRGQPVPYFIRHAREIDPGLIDRQIVHYGNYDPFMEFDIQINQIVPSMGYR
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Template Sequence  VXHNTLPHWREQLVDFYV. . SSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIH. . . PQGSTTKYRIIFKARVPPXGLA
Template Known Secondary structure 
SSS
..S
S
TT


TTTT...
TT
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   556...560.........570... ......580.........590.........600........ .610.........620.........630
 
   468.470.........480 .........490.........500 ..... ....510.........520
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Query Sequence  TLYIEANQPGNVI. . . . . . . . . . . . . . . . . . . . . . . . . AAKSDAEGILENAFWQIALN. EDGSL. QLVDKDSGVRYDRVL
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Template Conservation   
 
                                           


    
  
   
 
 

  
          
Template Sequence  TYVLTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHF
Template Known Secondary structure 
SS

TT

SS





TT
SS






TTS

TTS
SSSSS

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   631........640.........650.........660.........670.........680.........690.........700.........710
 
   521. .......530.........540.........550.........560.........570.........580.........590.....
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Query Sequence  QI. . . . . EESSDDGDEYDYSPAKEEWVITAANAKPQCDIIHEAWQSRAVIRYDMAVPLNLSERSARQSTGRVGVVLVVTL
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Template Sequence  KFLKYGVRSHGDRSGAYLFLPNGPASPVELGQ. . PVVLVTKGKLESSVSVGLPS. . . . . . . . . . . . . . . . . . . VVHQTIX
Template Known Secondary structure 


SSSS


SS



SSS




S..


SS
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   711........720.........730.........740.. .......750.........760.. .......
 
   596...600........ .610.........620.........630.........640.........650.........660.........670....
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Query Sequence  SHNSRRIDVDINL. DNQADDHRLRVLVPTPFNTDSVLADTQFGSLTRPVNDSAMNNWQQEGWKEAPVPVWNMLNYVALQE
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Template Sequence  RGGAPEIRNLVDIGSLDNTEIVXRLETHIDSGDIFYTDLNGLQFIKRRRLDKLPL. . . . . . . . . . QANYYPIPSGXFIED
Template Known Secondary structure  SSSS


TT
TT



TTTTT

TTS
G..........GGG
SS
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   770.........780.........790.........800.........810.........820.... .....830.........
 
   675....680.........690.........700.........710.........720.........730.........740.........750....
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Query Sequence  GRNGMAVFSEGLREFEVIGEEKKTFAITLLRGVGLLGKEDLLLRPGRPSGIKMPVPDSQLRGLLSCRLSLLSYTGTPTAA
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Template Sequence  ANTRLTLLTGQPLGGSSL. . ASGELEIXQDRRLASDDERGLGQGVLDNK. PVLHIYRLVLEKVNNCVRPSKLHPAGYLTS
Template Known Secondary structure  SSSS


..STTBSS

SSS

S
B



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TTS



TT
S


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   840.........850....... ..860.........870.........880...... ...890.........900.........910......
 
   755....760.........770.........780.........790.........800 .........810.........820.....
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Query Sequence  GVAQQARAWLTPVQCYNKIPWDVMKLNKAGFNVPESYSLLKMPPVG. . . . CLISALKKAEDRQEVILRLFNPAES. . . . .
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Template Sequence  AAHKASQSLLDPLDKFIFA. . . . . . . ENEWIGAQGQFGGDHPSAREDLDVSVXRRLTKSSAKTQRVGYVLHRTNLXQCGT
Template Known Secondary structure  S


.......SS

TTB
S
TTS



TT
S
TT
SS





S
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   917..920.........930..... ....940.........950.........960.........970.........980.........
 
   826...830.........840.........850... ......860.........870.......
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Query Sequence  . ATCDATVAFSREVISCSETMMDEHITTE. . ENQGSNLSGPFLPGQSRTFSYRLA
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Template Sequence  PEEHTQKLDVCHLLPNVARCERTTLTFLQNLEHLDGXVAPEVCPXETAAYVSSHS
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GGGSSSS
TTS
S
GGG





TT

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   990.........1000.........1010.........1020.........1030.........1040....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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