Job Description P37758 Confidence 7.92% Date Thu Jan 5 11:57:30 GMT 2012 Rank 22 Aligned Residues 432 % Identity 10% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	P	A	F	W	E	N	K	G	K	H	I	A	R	R	N	L	W	I	S	V	S	C	L	L	L	A	F	C	V	W	M	L	F	S	A	V	T	V	N	L	N	K	I	G	F	N	F	T	T	D	Q	L	F	L	L	T	A	L	P	S	V	S	G	A	L	L	R	V	P	Y	S	F	M	V	P	I	F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	S	V	H	R	Y	K	K	E	A	S	N	L	I	K	L	A	T	P	V	L	I	A	S	V	A	Q	T	G	M	G	F	V	D	T	I	M	A	G	G	V	S	A	I	D	M	A	A	V	S	I	A	A	S	I	W	L	P	S	I	L	F	G	V	G	L	L	M	A	L	V	P	V	V	A	Q	L	N	G
Template Known Secondary structure			T	T																																								T	T	T	T	T	T																								G	G	G		T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		99	100	.	.															.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query Sequence		G	R	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	F	S	T	A	I	L	I	I	P	C	V	W	L	G	I	A	V	Q	N	P	N	T	P	F	G	I	F	I	V	I	A	L	L	C	G	F	A	.	G	A	N	F	A	S	S	M	G	N	I	S	F	F	F	P	K	A	K	Q	G	S
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template Conservation
Template Sequence		A	G	R	Q	H	K	I	P	F	E	V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S	L	T	K
Template Known Secondary structure		S	S	S	S	S	S																															S	S		S	S	T	T																											T	T	T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	G	I	N	G	G	L	G	N	L	G	V	S	V	M	Q	L	V	A	P	L	V	I	F	V	P	V	F	A	F	L	G	V	N	G	V	P	Q	A	D	G	S	V	M	S	L	A	N	A	A	W	I	W	V	P	L	L	A	I	A	T	I	A	A	W	S	G	M	N	D	I	A	S	S	R	A	S	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	M	V	I	G	F	I	G	L	L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G	A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	F	Y	I	V	T	S	K	R	L	A	H	V	K	V	F	E	T	F	H	K	P	Q	P	K	E	L	I	R	L
Template Known Secondary structure																							T	T		S	S																														T		T	T												S	S	T	T	T	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	L	P	V	L	Q	R	L	H	L	W	L	L	S	L	L	Y	L	A	T	F	G	S	F	I	G	F	S	A	G	F	A	M	L	A	K	T	Q	F	P	D	V	N	I	L	R	L	A	F	F	G	P	F	I	G	A	I	A	R	S	V	G	G	A	I	S	D	K	F	G	G	V	R	V	T	L	I	N	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	L	G	F	P	V	A	A	A	L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A	P	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I	A	A	N	V	G
Template Known Secondary structure																										T			S		S	T					T	T																											G	G	G	S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	M	A	I	F	S	A	L	L	F	L	T	L	P	G	T	G	S	G	N	F	I	A	F	Y	A	V	F	M	G	L	F	L	T	A	G	L	G	S	G	S	T	F	Q	M	I	A	V	I	F	R	Q	I	T	I	Y	R	V	K	M	K	G	G	S	D	E	Q	A	H	K	E	A	V	T	E	T	A	A	A
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	M	T	G	L	A	T	A	C	I	T	.	.	.	.	.	.	.	.	.	.	.	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	R	G	Y	K	D	M	T	A	I
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.														T	S	S		S	S	T	T																													G	G	G	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.												.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.					.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		L	G	F	I	S	A	I	G	A	V	G	G	F	F	I	P	Q	A	F	G	M	S	.	.	.	.	L	N	M	T	G	S	P	V	G	A	M	K	V	F	L	I	F	Y	I	V	C	V	L	L	T	W	L	V	Y	G	R	R	K	F	S	Q	K
Query Conservation																								.	.	.	.
Alig confidence																								.	.	.	.						.
Template Conservation																																	.
Template Sequence		F	H	R	T	F	I	S	Y	W	V	L	G	L	P	T	G	Y	I	L	G	M	T	N	W	L	T	E	Q	P	L	G	.	A	K	G	F	W	L	G	F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S	D
Template Known Secondary structure																									S	S	S			S			.																			T	G	G	G	S	T	T	T			S	S
Template Predicted Secondary structure																																	.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.