Job Description P76085 Confidence 100.00% Date Thu Jan 5 12:18:37 GMT 2012 Rank 3 Aligned Residues 415 % Identity 41% Template c3qovD_ PDB info PDB header:ligase Chain: D: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of a hypothetical acyl-coa ligase (bt_0428) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution Resolution 2.20 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	E	T	A	S	V	D	E	L	Q	A	L	Q	T	Q	R	L	K	W	T	L	K	H	A	Y	E	N	V	P	M	Y	R	R	K	F	D	A	A	G	V	H	P	D	D	F	R	E	L	S	D	L	R	K	F	P	C	T	T	K	Q	D	L	R	D	N	Y	P	F	D	T	F	A	V	P	M	E	Q	V	V
Query Conservation
Alig confidence																											.																																																						.
Template Conservation																											.																																																						.
Template Sequence		E	I	E	I	X	S	R	E	K	L	Q	E	L	Q	L	Q	R	L	K	K	T	I	N	I	A	.	A	N	S	P	Y	Y	K	E	V	F	S	K	N	G	I	T	G	D	S	I	Q	S	L	D	D	I	R	K	I	P	F	T	T	K	S	D	X	R	A	N	Y	P	F	G	L	V	A	G	D	X	K	R	D	.
Template Known Secondary structure					T																						.	T	T	S										T	T			S	S	S		S	S	G	G	G	G	G	G	S			B								T	T	T	T	T	T			S						.
Template Predicted Secondary structure																											.																																																						.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	Q	N	D	I	D	N	W	A	N	I	V	A	R	S	L	R	A	A	G	G	S	P	K	D	K	I	H	V	A	Y	G	Y	G	L	F	T	G	G	L	G	A	H	Y	G	A	E	R	L	G	A	T	V	I	P	M	S	G	G	Q	T	E	K
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	G	V	R	I	H	S	S	N	P	T	V	I	V	H	S	Q	H	D	L	D	S	W	A	N	L	V	A	R	C	L	Y	X	V	G	I	R	K	T	D	V	F	Q	N	S	S	G	Y	G	X	F	T	G	G	L	G	F	Q	Y	G	A	E	R	L	G	C	L	T	V	P	A	A	A	G	N	S	K	R
Template Known Secondary structure		.	.	.																																	T	T			T	T	S						S			T	T															T								S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	Q	L	I	R	D	F	Q	P	D	M	I	M	V	T	P	S	Y	C	L	N	L	I	E	E	L	E	R	Q	L	G	G	D	A	S	G	C	S	L	R	V	G	V	F	G	A	E	P	W	T	Q	A	M	R	K	E	I	E	R	R	L	G	I	T	A	L	D	I	Y	G	L	S	E	V	M	G	P	G	V
Query Conservation
Alig confidence																																					.
Template Conservation																																					.
Template Sequence		Q	I	K	F	I	S	D	F	K	T	T	A	L	H	A	I	P	S	Y	A	I	R	L	A	E	V	F	Q	E	E	G	I	D	P	R	.	E	T	T	L	K	T	L	V	I	G	A	E	P	H	T	D	E	Q	R	R	K	I	E	R	X	L	N	V	K	A	Y	N	S	F	G	X	T	E	X	N	G	P	G	V
Template Known Secondary structure										T																					T	T			T	T	.	S	S	S								S	S															T	S									G	G	G	T
Template Predicted Secondary structure																																					.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.
Query SS confidence																																																																								.	.	.
Query Sequence		A	M	E	C	L	E	T	T	D	G	P	T	I	W	E	D	H	F	Y	P	E	I	V	N	P	H	D	G	T	P	L	A	D	G	E	H	G	E	L	L	F	T	T	L	T	K	E	A	L	P	V	I	R	Y	R	T	R	D	L	T	R	L	L	P	G	T	A	R	T	M	.	.	.	R	R	M	D	R	I	S
Query Conservation																																																																								.	.	.
Alig confidence											.																																																													.	.	.
Template Conservation											.
Template Sequence		A	F	E	C	Q	E	Q	N	G	.	X	H	F	W	E	D	C	Y	L	V	E	I	I	D	P	E	T	G	E	P	V	P	E	G	E	I	G	E	L	V	L	T	T	L	D	R	E	X	X	P	L	I	R	Y	R	T	R	D	L	T	R	I	L	P	G	K	C	P	C	G	R	T	H	L	R	I	D	R	I	K
Template Known Secondary structure						T	T		S	S	.					T	T	T								T	T	T		S	B		S	T	T										S	S			S	S				S												S			T	T				S
Template Predicted Secondary structure											.
Template SS confidence
		248	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	S	D	D	M	L	I	I	R	G	V	N	V	F	P	S	Q	L	E	E	E	I	V	K	F	E	H	L	S	P	H	Y	Q	L	E	V	N	R	R	G	H	L	D	S	L	S	V	K	V	E	L	K	E	S	S	L	T	L	T	H	E	Q	R	C	Q	V	C	H	Q	L	R	H	R	I	K	S	M	V	G
Query Conservation
Alig confidence																																																											.	.	.
Template Conservation																																																											.	.	.
Template Sequence		G	R	S	D	D	X	F	I	I	K	G	V	N	I	F	P	X	Q	V	E	K	I	L	V	Q	F	P	E	L	G	S	N	Y	L	I	T	L	E	T	N	Q	D	E	X	I	V	E	V	E	L	S	D	L	S	T	D	N	.	.	.	Y	I	E	L	E	K	I	R	R	D	I	I	R	Q	L	K	D	E	I	L
Template Known Secondary structure				S	T	T					T	T													T	T		T	T																								S	S					.	.	.																				S
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.				.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	T	D	V	M	I	V	N	C	G	S	I	P	R	S	E	G	K	A	C	R	V	F	D	L	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	P	K	V	K	L	V	K	K	G	S	L	P	Q	S	E	G	K	A	V	R	V	K	D	L	R	D
Template Known Secondary structure		S									T	T		S				S	S	S								S
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.