Job Description P76085 Confidence 100.00% Date Thu Jan 5 12:18:37 GMT 2012 Rank 28 Aligned Residues 344 % Identity 17% Template c3l8cA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1; PDBTitle: structure of probable d-alanine--poly(phosphoribitol) ligase2 subunit-1 from streptococcus pyogenes Resolution 2.41 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	D	L	R	D	N	Y	P	F	D	T	F	A	V	P	M	E	Q	V	V	R	I	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	Q	N	D	I	D	N	W	A	N	I	V	A	R	S	L	R	A	A	G	G	S	P	K	D	K	I	H	V	A	Y	G	Y	G	L	F	T	G	G	L	G	A
Query Conservation
Alig confidence																																																								.	.	.	.
Template Conservation																																																								.	.	.	.
Template Sequence		S	A	K	L	A	E	M	P	Y	E	R	T	H	S	V	K	G	D	D	N	Y	Y	I	I	F	T	S	G	Q	P	K	G	V	Q	I	S	H	D	N	L	L	S	F	T	N	W	M	I	E	D	A	A	F	D	.	.	.	.	V	P	K	Q	P	Q	M	L	A	Q	P	P	Y	S	F	D	L	S	V	M	Y	W
Template Known Secondary structure							T						S	S				T	T	S																																T	T	T		.	.	.	.			S	S							S		T	T	S	G	G	G
Template Predicted Secondary structure																																																								.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		H	Y	G	A	E	R	L	G	A	T	V	I	P	M	S	.	.	G	G	Q	T	E	K	Q	A	Q	L	I	R	D	F	Q	P	D	M	I	M	V	T	P	S	Y	C	L	N	L	I	E	E	L	E	R	Q	L	G	G	D	A	S	G	C	S	L	R	V	G	V	F	G	A	E	P	W	T	Q	A	M	R	K	E
Query Conservation																	.	.
Alig confidence																	.	.																																								.	.	.
Template Conservation																																																										.	.	.
Template Sequence		A	P	T	L	A	L	G	G	T	L	F	A	L	P	K	E	L	V	A	D	F	K	Q	L	F	T	T	I	A	Q	L	P	V	G	I	W	T	S	T	P	S	F	A	D	M	A	M	L	S	D	D	F	C	Q	A	K	.	.	.	M	P	A	L	T	H	F	Y	F	D	G	E	E	L	T	V	S	T	A	R	K
Template Known Secondary structure							T	T								G	G	G	T	T												S			S														T	S	T	T		S	T	T	T	.	.	.		T	T								S	S
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		226	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.						.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.																										.	.	.	.	.
Query SS confidence							.																										.	.	.	.	.
Query Sequence		I	E	R	R	L	.	G	I	T	A	L	D	I	Y	G	L	S	E	V	M	G	P	G	V	A	M	E	C	L	E	T	.	.	.	.	.	T	D	G	P	T	I	W	E	D	H	F	Y	P	E	I	V	N	P	H	D	G	T	P	L	A	D	G	E	H	G	E	L	L	F	T	T	L	T	K	E	A	L	P	V
Query Conservation							.																										.	.	.	.	.
Alig confidence							.																										.	.	.	.	.
Template Conservation
Template Sequence		L	F	E	R	F	P	S	A	K	I	I	N	A	Y	G	P	T	E	A	T	V	A	L	S	A	I	E	I	T	R	E	M	V	D	N	Y	T	R	L	P	I	G	Y	P	K	P	D	S	P	T	Y	I	I	D	E	D	G	K	E	L	S	S	G	E	Q	G	E	I	I	V	T	G	P	A	V	S	K	G	Y	L
Template Known Secondary structure							T	T										G	G	G	S	S		S														S	S								T	T	S							T	T	S		B			T	T									S	T	T	S		S		B	T
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		300	.																	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	T	R	D	L	T	R	L	L	P	G	T	A	R	T	M	R	R	M	D	R	I	S	G	R	S	D	D	M	L	I	I	R	G	V	N	V	F	P	S	Q	L	E	E	E	I	V	K	F	E	H	L	S	P	H	Y	Q	L	E	V	N
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.													.	.	.	.	.																								.	.
Template Conservation																																	.	.	.	.	.	.													.	.	.	.	.																								.	.
Template Sequence		N	N	P	E	K	T	A	E	A	F	F	T	F	K	G	Q	P	A	Y	H	T	G	D	I	G	S	L	T	E	D	N	.	.	.	.	.	.	I	L	L	Y	G	G	R	L	D	F	Q	I	.	.	.	.	.	K	I	E	L	E	D	V	S	Q	Q	L	N	Q	S	P	M	V	A	S	A	V	A	V	.	.	P
Template Known Secondary structure		T													T	T														S	S	S	.	.	.	.	.	.								G	G	G	B		.	.	.	.	.			B										T	S	T	T								.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.													.	.	.	.	.																								.	.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.							390	.	.	.	.	.	.	.	.	.	400	.						.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.			.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.				.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																							.	.	.																																						.
Query SS confidence																							.	.	.																																						.
Query Sequence		R	R	G	H	L	D	S	L	S	V	K	V	E	L	K	E	S	S	L	T	L	.	.	.	T	H	E	Q	R	C	Q	V	C	H	Q	L	R	H	R	I	K	S	M	V	G	I	S	T	D	V	M	I	V	N	C	G	S	I	P	R	S	.	E	G	K	A	C	R	V	F	D	L	R	N	I	V
Query Conservation																							.	.	.																																						.
Alig confidence																							.	.	.																								.	.	.												.								.
Template Conservation																																																	.	.	.																				.
Template Sequence		R	Y	N	K	E	H	K	L	L	A	Y	I	V	V	K	D	G	V	K	E	R	F	D	R	E	L	E	L	T	K	A	I	K	A	S	V	K	D	H	M	M	S	Y	M	M	P	S	.	.	.	K	F	L	Y	R	D	S	L	P	L	T	P	N	G	K	I	D	I	K	.	T	L	I	N	E	V
Template Known Secondary structure				S	S	S											T	T	S	G	G	G		S	S												S	G	G	G	S		G	G	G	S		S	.	.	.						S	S			B		T	T	S	S	B				.						T
Template Predicted Secondary structure																																																	.	.	.																				.
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.				.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.		.	.	.	500	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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