Phyre 2 alignment of P76085 with c3g7sA

Job Description P76085
Confidence 100.00% Date Thu Jan 5 12:18:37 GMT 2012

Rank 23 Aligned Residues 311

% Identity 19% Template c3g7sA_

PDB info PDB header:ligase Chain: A: PDB Molecule:long-chain-fatty-acid--coa ligase (fadd-1); PDBTitle: crystal structure of a long-chain-fatty-acid-coa ligase2 (fadd1) from archaeoglobus fulgidus

Resolution 2.15 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	D	L	R	D	N	Y	P	F	D	T	F	A	V	P	M	E	Q	V	V	R	I	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	Q	N	D	I	D	N	W	A	N	I	V	A	R	S	L	R	A	A	G	G	S	P	K	D	K	I	H	V	A	Y	G	Y	G	L	F	T	G	G	L	G	A	H
Query Conservation
Alig confidence																																																						.	.	.	.
Template Conservation																																																						.	.	.	.
Template Sequence	X	D	S	G	S	E	D	F	E	N	V	K	V	N	P	E	E	D	V	A	L	I	P	Y	T	G	G	T	T	G	P	K	G	V	X	L	T	H	F	N	L	A	A	N	A	L	Q	L	A	V	A	T	G	.	.	.	.	L	S	H	X	D	T	I	V	G	C	X	P	X	F	H	S	A	E	F	G	L	V	N
Template Known Secondary structure				S		S									T	T	T	S																																				.	.	.	.			T	T							S		T	T	S								T
Template Predicted Secondary structure																																																						.	.	.	.
Template SS confidence
	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.					.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

	149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	G	A	E	R	L	G	A	T	V	I	P	M	S	G	G	Q	T	E	K	Q	A	Q	L	I	R	D	F	Q	P	D	M	I	M	V	T	P	S	Y	C	L	N	L	I	E	E	L	E	R	Q	L	G	G	D	A	S	G	C	S	L	R	V	G	V	F	G	A	E	P	W	T	Q	A	M	R	K	E	I	E	R
Query Conservation
Alig confidence			.																																																					.
Template Conservation			.																																																					.
Template Sequence	L	X	.	V	T	V	G	N	E	Y	V	V	X	G	X	F	N	Q	E	X	L	A	E	N	I	E	K	Y	K	G	T	F	S	W	A	V	P	P	A	L	N	V	L	V	N	T	L	E	S	S	N	K	T	Y	D	.	W	S	Y	L	K	V	F	A	T	G	A	W	P	V	A	P	A	L	V	E	K	L	L	K
Template Known Secondary structure	T		.											S	S													T	T																					S						.		T	T								S	S
Template Predicted Secondary structure			.																																																					.
Template SS confidence
	239	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

	229	230								.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.																									.	.
Query SS confidence			.	.	.	.	.	.	.																									.	.
Query Sequence	R	L	.	.	.	.	.	.	.	G	I	T	A	L	D	I	Y	G	L	S	E	V	M	G	P	G	V	A	M	E	C	L	E	.	.	T	T	D	G	P	T	I	W	E	D	H	F	Y	P	E	I	V	N	P	H	D	G	T	P	L	A	D	G	E	H	G	E	L	L	F	T	T	L	T	K	E	A	L	P	V
Query Conservation			.	.	.	.	.	.	.																									.	.
Alig confidence			.	.	.	.	.	.	.																									.	.
Template Conservation
Template Sequence	L	A	A	E	K	C	N	N	P	R	L	R	H	N	Q	I	W	G	X	T	E	A	C	P	X	V	T	T	N	P	P	L	R	L	D	K	S	T	T	Q	G	V	P	X	S	D	I	E	L	K	V	I	S	L	E	D	G	R	E	L	G	V	G	E	S	G	E	I	V	I	R	G	P	N	I	F	K	G	Y	W
Template Known Secondary structure						S	S		T	T										G	G	G	S	S							G	G	G	G	G	G	T	T	S						T	T								S	S	S						T	T									S	T	T	S		S			T
Template Predicted Secondary structure
Template SS confidence
	317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

	300																		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	R	T	R	D	L	T	R	L	L	P	G	T	A	R	T	M	R	R	M	D	R	I	S	G	R	S	D	D	M	L	I	I	R	G	V	N	V	F	P	S	Q	L	E	E	E	I	V	K	F	E	H	L	S	P	H	Y	Q	L	E	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	R	E	K	E	N	Q	E	C	W	W	Y	D	E	K	G	R	K	F	F	R	T	G	D	V	G	F	I	D	E	E	G	.	.	.	.	.	.	F	L	H	F	Q	D	R	.	.	.	.	.	.	.	.	.	.	.	.	V	P	F	E	L	E	A	L	L	X	K	H	E	A	V	X	D	V	A	V	I	G	K
Template Known Secondary structure	T		T	T	G	G	G	T	S					T	T															T	T	S	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.										T	T	S	T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.							.	430	.	.	.	.	.													.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.

	363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	R	R	G	H	L	D	S	L	S	V	K	V	E	L	K	E	S	S	L	T	L	T	H	E	Q	R	C	Q	V	C	H	Q	L	R	H	R	I	K	S	M	V	G	I	S	T	D	V	M	I	V	N	C	G	S	I	P
Query Conservation
Alig confidence				.	.	.	.	.	.																	.	.															.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.																	.	.															.	.	.	.	.	.	.	.
Template Sequence	P	D	P	.	.	.	.	.	.	K	A	F	I	V	L	K	P	E	Y	R	G	K	V	D	E	.	.	E	D	I	I	E	W	V	R	E	R	I	S	R	E	.	.	.	.	.	.	.	.	V	E	F	V	E	E	L	P
Template Known Secondary structure				.	.	.	.	.	.								S	T	T	T	T	S				.	.									T	T					.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.																	.	.															.	.	.	.	.	.	.	.
Template SS confidence
	471	.	.							.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.			490	.	.	.	.	.	.	.	.	.	500	.	.	.									.	.	.	.	.	.	510	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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