Job Description P76085 Confidence 100.00% Date Thu Jan 5 12:18:37 GMT 2012 Rank 13 Aligned Residues 329 % Identity 16% Template c3etcB_ PDB info PDB header:ligase Chain: B: PDB Molecule:amp-binding protein; PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298 Resolution 2.10 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	F	D	T	F	A	V	P	M	E	Q	V	V	R	I	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	Q	N	D	I	D	N	W	A	N	I	V	A	R	S	L	R	A	A	G	G	S	P	K	D	K	I	H	V	A	Y	G	Y	G	L	F	T	G	G	L	G	A	H	Y	G	A	E	R	L
Query Conservation
Alig confidence																																																		.	.	.
Template Conservation																																																		.	.	.
Template Sequence		R	P	T	G	E	V	S	T	K	N	E	D	I	C	L	V	Y	F	S	S	G	T	A	G	F	P	K	M	V	E	H	D	N	T	Y	P	L	G	H	I	L	T	A	K	Y	W	Q	N	.	.	.	V	E	D	D	G	L	H	Y	T	V	A	D	S	G	W	G	K	C	V	W	G	K	L	Y	G	Q	W	I	A
Template Known Secondary structure					G	G	G	S			T	T	S										S	S	S	S								T	T											T	T	S		.	.	.			T	T									T	T	S	T						T	T						T
Template Predicted Secondary structure																																																		.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		G	A	T	V	I	P	M	S	.	.	G	G	Q	T	E	K	Q	A	Q	L	I	R	D	F	Q	P	D	M	I	M	V	T	P	S	Y	C	L	N	L	I	E	E	L	E	R	Q	L	G	G	D	A	S	G	C	S	L	R	V	G	V	F	G	A	E	P	W	T	Q	A	M	R	K	E	I	E	R	R	L	G	I
Query Conservation										.	.
Alig confidence										.	.																																								.	.	.	.
Template Conservation																																																			.	.	.	.
Template Sequence		G	C	A	V	F	V	Y	D	Y	D	R	F	E	A	K	N	M	L	E	K	A	S	K	Y	G	V	T	T	F	C	A	P	P	T	I	Y	R	F	L	I	K	E	D	L	S	H	Y	N	F	.	.	.	.	S	T	L	K	Y	A	V	V	A	G	E	P	L	N	P	E	V	F	N	R	F	L	E	F	T	G	I
Template Known Secondary structure		T									S	S														T																	S		T	T	T	T	T		.	.	.	.		S								S	S															S
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.					.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	A	L	D	I	Y	G	L	S	E	V	M	G	P	G	V	A	M	E	C	L	E	T	T	D	G	P	T	I	W	E	D	H	F	Y	P	E	I	V	N	P	H	D	G	T	P	L	A	D	G	E	H	G	E	L	L	F	T	T	L	T	K	E	A	L	P	V	I	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	M	E	G	F	G	Q	T	E	T	V	V	T	I	A	T	F	P	W	M	E	P	K	P	G	S	I	G	K	P	T	P	G	Y	K	I	E	L	M	D	R	D	G	R	L	C	E	V	G	E	E	G	E	I	V	I	N	T	M	E	G	K	P	V	G	L	F	V	H	Y	G	K	D	P	E	R	T	E	E
Template Known Secondary structure										T	T	S	S							T	T	S				T	T			B				T	T								T	T	S		B			T	T										T	T				T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
							301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	R	Y	R	T	R	D	L	T	R	L	L	P	G	T	A	R	T	M	R	R	M	D	R	I	S	G	R	S	D	D	M	L	I	I	R	G	V	N	V	F	P	S	Q	L	E	E	E	I	V	K	F	E	H	L	S	P	H	Y	Q	L	E	V	N	R	R	G	H	L	D	S	L	S	V	K	V
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.															.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence		T	W	H	D	G	Y	Y	H	T	G	D	M	A	W	M	D	E	D	G	.	.	.	.	.	.	Y	L	W	F	V	G	R	A	D	D	I	I	K	T	S	G	Y	K	V	G	P	F	E	V	E	S	A	L	I	Q	H	P	A	V	L	E	C	A	I	T	G	V	P	D	P	V	R	G	Q	V	I	K	A	T	I
Template Known Secondary structure					T	T												T	T	S	.	.	.	.	.	.								S	S	S					T	T													T	T	S	T	T												T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.							.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	K	E	S	S	L	T	L	T	H	E	Q	R	C	Q	V	C	H	Q	L	R	H	R	I	K	S	M	V	G	I	S	T	D	V	M	I	V	N	C	G	S	I	P	R
Query Conservation
Alig confidence											.																							.	.	.
Template Conservation											.																							.	.	.
Template Sequence		V	L	T	K	D	Y	T	P	S	.	D	S	L	K	N	E	L	Q	D	H	V	K	N	V	T	A	P	Y	K	Y	P	R	.	.	.	I	I	E	F	V	P	E	L	P	K
Template Known Secondary structure					T	T					.															S		G	G	G			S	.	.	.						S
Template Predicted Secondary structure											.																							.	.	.
Template SS confidence
		499	500	.	.	.	.	.	.	.		.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.				530	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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