Job Description P76085 Confidence 100.00% Date Thu Jan 5 12:18:37 GMT 2012 Rank 10 Aligned Residues 352 % Identity 12% Template c3e7wA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1; PDBTitle: crystal structure of dlta: implications for the reaction2 mechanism of non-ribosomal peptide synthetase (nrps)3 adenylation domains Resolution 2.28 Å

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		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	Y	P	F	D	T	F	A	V	P	M	E	Q	V	V	R	I	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	Q	N	D	I	D	N	W	A	N	I	V	A	R	S	L	R	A	A	G	G	S	P	K	D	K	I	H	V	A	Y	G	Y	G	L	F	T	G	G	L	G	A	H	Y	G	A	E
Query Conservation
Alig confidence																																																				.	.	.
Template Conservation																																																				.	.	.
Template Sequence		G	G	S	V	S	Q	D	Q	W	V	K	E	H	E	T	F	Y	I	I	Y	T	S	G	S	T	G	N	P	K	G	V	Q	I	S	A	A	N	L	Q	S	F	T	D	W	I	C	A	D	F	P	.	.	.	V	S	G	G	K	I	F	L	N	Q	A	P	F	S	F	D	L	S	V	M	D	L	Y	P	C	L	Q
Template Known Secondary structure		S					G	G	G	S			T	T	S										T	T	S	S																						S	T	.	.	.	T	T	T	T							S		T	T	S	T
Template Predicted Secondary structure																																																				.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		R	L	G	A	T	V	I	P	M	S	.	.	G	G	Q	T	E	K	Q	A	Q	L	I	R	D	F	Q	P	D	M	I	M	V	T	P	S	Y	C	L	N	L	I	E	E	L	E	R	Q	L	G	G	D	A	S	G	C	S	L	R	V	G	V	F	G	A	E	P	W	T	Q	A	M	R	K	E	I	E	R	R	L
Query Conservation												.	.
Alig confidence												.	.																																								.	.	.
Template Conservation																																																					.	.	.
Template Sequence		S	G	G	T	L	H	C	V	T	K	D	A	V	N	K	P	K	V	L	F	E	E	L	K	K	S	G	L	N	V	W	T	S	T	P	S	F	V	Q	M	C	L	M	D	P	G	F	S	Q	D	L	.	.	.	L	P	H	A	D	T	F	M	F	C	G	E	V	L	P	V	S	V	A	K	A	L	L	E	R	F
Template Known Secondary structure		T	T													S														S														T	S	T	T		S	T	T	T	.	.	.		T	T								S	S
Template Predicted Secondary structure																																																					.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
			231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.							.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure		.																								.	.	.	.	.	.																																																.	.	.
Query SS confidence		.																								.	.	.	.	.	.																																																.	.	.
Query Sequence		.	G	I	T	A	L	D	I	Y	G	L	S	E	V	M	G	P	G	V	A	M	E	C	L	.	.	.	.	.	.	E	T	T	D	G	P	T	I	W	E	D	H	F	Y	P	E	I	V	N	P	H	D	G	T	P	L	A	D	G	E	H	G	E	L	L	F	T	T	L	T	K	E	A	L	P	V	I	.	.	.
Query Conservation		.																								.	.	.	.	.	.																																																.	.	.
Alig confidence		.																								.	.	.	.	.	.																				.																												.	.	.
Template Conservation																																																			.
Template Sequence		P	K	A	K	I	F	N	T	Y	G	P	T	E	A	T	V	A	V	T	S	V	E	I	T	N	D	V	I	S	R	S	E	S	L	P	V	G	F	A	K	P	D	M	N	I	F	I	M	D	.	E	E	G	Q	P	L	P	E	G	E	K	G	E	I	V	I	A	G	P	S	V	S	R	G	Y	L	G	E	P	E
Template Known Secondary structure		T	T										G	G	G	S	S		S											T	T		S	S				B				T	T								.	T	T	S		B			T	T									S	T	T	S				B	T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
								301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	R	Y	R	T	R	D	L	T	R	L	L	P	G	T	A	R	T	M	R	R	M	D	R	I	S	G	R	S	D	D	M	L	I	I	R	G	V	N	V	F	P	S	Q	L	E	E	E	I	V	K	F	E	H	L	S	P	H	Y	Q	L	E	V	N	R	R	G	H	L	D	S	L	S	V	K
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	E	K	A	F	F	S	H	E	G	Q	W	A	Y	R	T	G	D	A	G	F	I	Q	D	G	Q	I	F	C	Q	G	R	L	D	F	Q	I	K	L	H	G	Y	R	M	E	L	E	E	I	E	F	H	V	R	Q	S	Q	Y	V	R	S	A	V	V	I	P	Y	Q	P	N	G	T	V	E	Y	L	I	A	A
Template Known Secondary structure										S	S	S	S													T	T								S	S	S					T	T															S	T	T											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		V	E	L	K	E	S	S	L	T	L	T	H	E	Q	R	C	Q	V	C	H	Q	L	R	H	R	I	K	S	M	V	G	I	S	T	D	V	M	I	V	N	C	G	S	I	P	R	S	.	E	G	K	A	C	R	V	F	D	L	R	N	I	V
Query Conservation																																																	.
Alig confidence																																			.	.	.												.								.
Template Conservation																																			.	.	.																				.
Template Sequence		I	V	P	E	E	H	E	F	E	K	E	F	Q	L	T	S	A	I	K	K	E	L	A	A	S	L	P	A	Y	M	I	P	R	.	.	.	K	F	I	Y	Q	D	H	I	Q	M	T	A	N	G	K	I	D	R	K	.	R	I	G	E	E	V
Template Known Secondary structure										S	S																S		G	G	G	S		S	.	.	.						S				B		T	T	S		B				.
Template Predicted Secondary structure																																			.	.	.																				.
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.				.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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