Phyre 2 alignment of P76085 with c3dhvA

Job Description P76085
Confidence 100.00% Date Thu Jan 5 12:18:37 GMT 2012

Rank 24 Aligned Residues 350

% Identity 16% Template c3dhvA_

PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-poly(phosphoribitol) ligase; PDBTitle: crystal structure of dlta protein in complex with d-alanine2 adenylate

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	N	Y	P	F	D	T	F	A	V	P	M	E	Q	V	V	R	I	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	Q	N	D	I	D	N	W	A	N	I	V	A	R	S	L	R	A	A	G	G	S	P	K	D	K	I	H	V	A	Y	G	Y	G	L	F	T	G	G	L	G	A	H	Y	G	A	E
Query Conservation
Alig confidence																							.	.	.	.	.																								.	.	.
Template Conservation																							.	.	.	.	.																								.	.	.
Template Sequence	G	N	T	P	N	P	E	H	A	V	K	G	D	E	N	F	Y	I	I	Y	T	S	.	.	.	.	.	P	K	G	V	Q	I	T	Y	N	C	L	V	S	F	T	K	W	A	V	E	D	F	N	.	.	.	L	Q	T	G	Q	V	F	L	N	Q	A	P	F	S	F	D	L	S	V	M	D	I	Y	P	S	L	V
Template Known Secondary structure	T					G	G	G	S			T	T	S									.	.	.	.	.																						T	T	.	.	.			S	S							S		T	T	S	G	G	G
Template Predicted Secondary structure																							.	.	.	.	.																								.	.	.
Template SS confidence
	132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

	153	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence	R	L	G	A	T	V	I	P	M	S	.	.	G	G	Q	T	E	K	Q	A	Q	L	I	R	D	F	Q	P	D	M	I	M	V	T	P	S	Y	C	L	N	L	I	E	E	L	E	R	Q	L	G	G	D	A	S	G	C	S	L	R	V	G	V	F	G	A	E	P	W	T	Q	A	M	R	K	E	I	E	R	R	L
Query Conservation											.	.
Alig confidence											.	.																																														.	.
Template Conservation																																																										.	.
Template Sequence	T	G	G	T	L	W	A	I	D	K	D	M	I	A	R	P	K	D	L	F	A	S	L	E	Q	S	D	I	Q	V	W	T	S	T	P	S	F	A	E	M	C	L	M	E	A	S	F	S	E	S	M	L	P	N	M	K	T	.	.	F	L	F	C	G	E	V	L	P	N	E	V	A	R	K	L	I	E	R	F	P
Template Known Secondary structure	T	T													S												T																T	S	T	T		S	T	T	T	S	T	T				.	.					S	S															T
Template Predicted Secondary structure																																																										.	.
Template SS confidence
	209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

	231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.							.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																									.	.	.	.	.	.																																																	.	.
Query SS confidence																									.	.	.	.	.	.																																																	.	.
Query Sequence	G	I	T	A	L	D	I	Y	G	L	S	E	V	M	G	P	G	V	A	M	E	C	L	E	.	.	.	.	.	.	T	T	D	G	P	T	I	W	E	D	H	F	Y	P	E	I	V	N	P	H	D	G	T	P	L	A	D	G	E	H	G	E	L	L	F	T	T	L	T	K	E	A	L	P	V	I	R	Y	.	.
Query Conservation																									.	.	.	.	.	.																																																	.	.
Alig confidence																									.	.	.	.	.	.																			.																														.	.
Template Conservation																																																	.
Template Sequence	K	A	T	I	M	N	T	Y	G	P	T	E	A	T	V	A	V	T	G	I	H	V	T	E	E	V	L	D	Q	Y	K	S	L	P	V	G	Y	C	K	S	D	C	R	L	L	I	M	K	.	E	D	G	T	I	A	P	D	G	E	K	G	E	I	V	I	V	G	P	S	V	S	V	G	Y	L	G	S	P	E	L
Template Known Secondary structure	T										G	G	G	S	S		S														S	S								T	T								.	S	S	S	S	B			T	T									S	T	T	S		S		B	T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
	287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

								303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	R	T	R	D	L	T	R	L	L	P	G	T	A	R	T	M	R	R	M	D	R	I	S	G	R	S	D	D	M	L	I	I	R	G	V	N	V	F	P	S	Q	L	E	E	E	I	V	K	F	E	H	L	S	P	H	Y	Q	L	E	V	N	R	R	G	H	L	D	S	L	S	V	K	V
Query Conservation	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.
Template Conservation
Template Sequence	T	E	K	A	F	T	M	I	D	G	E	R	A	Y	K	T	G	D	A	G	Y	V	E	N	G	L	L	F	Y	N	G	R	L	D	F	Q	I	K	L	H	G	Y	R	M	E	L	E	E	I	E	H	H	L	R	A	C	S	Y	V	E	G	A	V	I	V	P	I	K	K	G	E	K	Y	D	Y	L	L	A	V	V
Template Known Secondary structure									T	T														T	T								G	G	G					S	S															S	T	T											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.

	376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence	E	L	K	E	S	S	L	T	L	T	H	E	Q	R	C	Q	V	C	H	Q	L	R	H	R	I	K	S	M	V	G	I	S	T	D	V	M	I	V	N	C	G	S	I	P	R	S	.	E	G	K	A	C	R	V	F	D	L	R	N	I	V	G	A
Query Conservation																																															.
Alig confidence																																	.	.	.												.								.
Template Conservation																																	.	.	.																				.
Template Sequence	V	P	G	E	H	S	F	E	K	E	F	K	L	T	S	A	I	K	K	E	L	N	E	R	L	P	N	Y	M	I	P	R	.	.	.	K	F	M	Y	Q	S	S	I	P	M	T	P	N	G	K	V	D	R	K	.	K	L	L	S	E	V	T	A
Template Known Secondary structure				S				S	S														T	T	S		G	G	G	S		S	.	.	.						S				B		T	T	S	S	B				.
Template Predicted Secondary structure																																	.	.	.																				.
Template SS confidence
	446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.				.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.		.	.	.	500	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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