Return to main results Retrieve Phyre Job Id

Job DescriptionP76085
Confidence100.00%DateThu Jan 5 12:18:37 GMT 2012
Rank5Aligned Residues329
% Identity19%Templatec2vsqA_
PDB info PDB header:ligaseChain: A: PDB Molecule:surfactin synthetase subunit 3; PDBTitle: structure of surfactin a synthetase c (srfa-c), a2 nonribosomal peptide synthetase termination module
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   73......80.........90.........100.........110.........120.........130.........140.........150..
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  DNYPFDTFAVPMEQVVRIHASSGTTGKPTVVGYTQNDIDNWANIVARSLRAAGGSPKDKIHVAYGYGLFTGGLGAHYGAE
Query Conservation                   
  





 

 
  
   
                   
                      
Alig confidence 







































....



































Template Conservation                 
 

 





 



 
 
  
  ....                
      

     
   
 
Template Sequence  EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQG. . . . LVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASML
Template Known Secondary structure  S
SS






TTS

SSSS
....SS

SS


TT

S
TTSTT
Template Predicted Secondary structure 




















....








Template SS confidence 















































































   595....600.........610.........620.........630.... .....640.........650.........660.........670
 
   153......160.. .......170.........180.........190.........200.........210.........220.........230
Predicted Secondary structure 


..
























Query SS confidence 









. .



































































Query Sequence  RLGATVIPMS. . GGQTEKQAQLIRDFQPDMIMVTPSYCLNLIEELERQLGGDASGCSLRVGVFGAEPWTQAMRKEIERRL
Query Conservation    
       ..          
     
 
   

    
                
  
   
               
Alig confidence 









..



































......

























Template Conservation   
   
            
   
    

     
     
       ......   

 
  


              
Template Sequence  NAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW. . . . . . MKGLRCILFGGERASVPHVRKALRIM
Template Known Secondary structure  TT


GGGTT
T


S......T
SSS


Template Predicted Secondary structure 












......










Template SS confidence 















































































   671........680.........690.........700.........710........ .720.........730.........740....
 
   231........240.........250.... .....260.........270.........280.........290.........300.
Predicted Secondary structure  .








.....
































...
Query SS confidence  .























. . . . .














































. . .
Query Sequence  . GITALDIYGLSEVMGPGVAMECLE. . . . . TTDGPTIWEDHFYPEIVNPHDGTPLADGEHGELLFTTLTKEALPVIR. . .
Query Conservation  .   
   

 

 
          .....               


         
  


 

       
  
...
Alig confidence  .























.....



















.

























...
Template Conservation      
 
 

 

                     

         
 
  .    
 
  


 
 
  

 

      
Template Sequence  GPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQ. SQLQPFGAVGELCISGMGVSKGYVNRADL
Template Known Secondary structure 
TT


GGGSS
S




SS
SS


B
TT
TT.S
B

TT

TT



BTT
Template Predicted Secondary structure 





























.




















Template SS confidence 















































































   745....750.........760.........770.........780.........790.... .....800.........810.........820...
 
   302.......310.........320.........330.........340.........350.........360.....
Predicted Secondary structure  ................























Query SS confidence  . . . . . . . . . . . . . . . .































































Query Sequence  . . . . . . . . . . . . . . . . YRTRDLTRLLPGTARTMRRMDRISGRSDDMLIIRGVNVFPSQLEEEIVKFEHLSPHYQLEVNRR
Query Conservation  ................
 


       
           

        
  
 
  

  
     
    

     
Alig confidence  ................












......












































Template Conservation 
   
   
     
 





     

...... 
   

 
 



 
 



 


  
   
 
  
 
      
Template Sequence  TKEKFIENPFKPGETLYRTGDLARWLPDG. . . . . . TIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHE
Template Known Secondary structure 
TTSTT

TTS......
GGGTTSSS



S
Template Predicted Secondary structure 















......
















Template SS confidence 















































































   824.....830.........840.........850.. .......860.........870.........880.........890.......
 
   366...370.........380.........390.........400.........410.........420. ......
Predicted Secondary structure 























.


Query SS confidence 























































.





Query Sequence  GHLDSLSVKVELKESSLTLTHEQRCQVCHQLRHRIKSMVGISTDVMIVNCGSIPRS. EGKACR
Query Conservation           
                
   
   
         
  
    



.


  
Alig confidence 
















......















...













.





Template Conservation       


 
       ......       
   

  
... 
        

 
  




Template Sequence  SGDASINAYLVNRTQLS. . . . . . AEDVKAHLKKQLPAYM. . . VPQTFTFLDELPLTTNGKVNK
Template Known Secondary structure  SS


SSSS
......S
GGG...S
SS




SS
SS

Template Predicted Secondary structure 








......





...













Template SS confidence 






























































   898.900.........910.... .....920.........930 .........940.........950.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions