Job Description P76085 Confidence 100.00% Date Thu Jan 5 12:18:37 GMT 2012 Rank 26 Aligned Residues 309 % Identity 15% Template c1amuB_ PDB info PDB header:peptide synthetase Chain: B: PDB Molecule:gramicidin synthetase 1; PDBTitle: phenylalanine activating domain of gramicidin synthetase 12 in a complex with amp and phenylalanine Resolution 1.90 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	Q	N	D	I	D	N	W	A	N	I	V	A	R	S	L	R	A	A	G	G	S	P	K	D	K	I	H	V	A	Y	G	Y	G	L	F	T	G	G	L	G	A	H	Y	G	A	E	R	L	G	A	T	V	I	P	M	S	.	.	G	G	Q	T	E	K	Q
Query Conservation																																																																									.	.
Alig confidence																																	.	.	.																																						.	.
Template Conservation																																	.	.	.
Template Sequence		L	A	Y	V	I	Y	T	N	P	K	G	T	M	L	E	H	K	G	I	S	N	L	K	V	F	F	E	N	S	L	N	.	.	.	V	T	E	K	D	R	I	G	Q	F	A	S	I	S	F	D	A	S	V	W	E	M	F	M	A	L	L	T	G	A	S	L	Y	I	I	L	K	D	T	I	N	D	F	V	K	F
Template Known Secondary structure																														T	S		.	.	.			T	T							S		T	T	S	T											T	T	T												T
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	L	I	R	D	F	Q	P	D	M	I	M	V	T	P	S	Y	C	L	N	L	I	E	E	L	E	R	Q	L	G	G	D	A	S	G	C	S	L	R	V	G	V	F	G	A	E	P	W	T	Q	A	M	R	K	E	I	E	R	R	L	G	I	T	A	L	D	I	Y	G	L	S	E	V	M	G	P	G	V	A
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.
Template Sequence		E	Q	Y	I	N	Q	K	E	I	T	V	I	T	L	P	P	T	Y	V	V	H	.	.	.	.	.	.	.	.	.	L	D	P	E	R	I	L	S	I	Q	T	L	I	T	A	G	S	A	T	S	P	S	L	V	N	K	W	K	E	K	V	T	Y	I	N	A	Y	G	P	T	E	T	T	I	C	A	T	T	W	V
Template Known Secondary structure								T	T												T	T	.	.	.	.	.	.	.	.	.	S		T	T	T			S		S						S	S											T	T	T	S									G	G	G	S	S		S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.										.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300																				.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	E	C	L	E	T	T	D	G	P	T	I	W	E	D	H	F	Y	P	E	I	.	V	N	P	H	D	G	T	P	L	A	D	G	E	H	G	E	L	L	F	T	T	L	T	K	E	A	L	P	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	R	T	R	D	L	T	R
Query Conservation																							.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	K	E	T	I	G	H	S	V	P	I	G	A	P	I	Q	N	T	Q	I	Y	I	V	D	E	N	L	Q	L	K	S	V	G	E	A	G	E	L	C	I	G	G	E	G	L	A	R	G	Y	W	K	R	P	E	L	T	S	Q	K	F	V	D	N	P	F	V	P	G	E	K	L	Y	K	T	G	D	Q	A	R
Template Known Secondary structure				S	S				S	S				B				T	T								T	T	S		B			T	T										T	T						T	T													S	S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	P	G	T	A	R	T	M	R	R	M	D	R	I	S	G	R	S	D	D	M	L	I	I	R	G	V	N	V	F	P	S	Q	L	E	E	E	I	V	K	F	E	H	L	S	P	H	Y	Q	L	E	V	N	R	R	G	H	L	D	S	L	S	V	K	V	E	L	K	E	S	S	L	T	L	T	H	E	Q	R
Query Conservation
Alig confidence							.	.	.	.	.	.																																																															.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.																																																															.	.	.	.	.	.
Template Sequence		W	L	S	D	G	.	.	.	.	.	.	N	I	E	Y	L	G	R	I	D	N	Q	V	K	I	R	G	H	R	V	E	L	E	E	V	E	S	I	L	L	K	H	M	Y	I	S	E	T	A	V	S	V	H	K	D	H	Q	E	Q	P	Y	L	C	A	Y	F	V	S	E	K	H	I	P	.	.	.	.	.	.	L
Template Known Secondary structure				T	T	S	.	.	.	.	.	.								G	G	G					T	T														T	S	T	T												T	T	S											S	S				.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.																																																															.	.	.	.	.	.
Template SS confidence
		417	.	.	420	.							.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.							.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		C	Q	V	C	H	Q	L	R	H	R	I	K	S	M	V	G	I	S	T	D	V	M	I	V	N	C	G	S	I	P	R	S	.	E	G	K	A	C	R
Query Conservation																																		.
Alig confidence																				.	.	.												.
Template Conservation																				.	.	.
Template Sequence		E	Q	L	R	Q	F	S	S	E	E	L	P	T	Y	M	I	P	S	.	.	.	Y	F	I	Q	L	D	K	M	P	L	T	S	N	G	K	I	D	R
Template Known Secondary structure												S		G	G	G	S		S	.	.	.						S	S			B		T	T	S	S	B		G
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.				.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions