|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | |
|
. | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | K | V | G | I | N | G | F | G | R | I | G | R | L | V | L | G | R | L | L | E | . |
. |
V | K | S | N | I | D | V | V | A | I | N | D | L | T | S | P | K | I | L | A | Y | L | L | K | H | D | S | N | Y | G | P | F | P | W | S | V | D | F | T | E | D | S | L | I | V | D | G | K | S | I | A | V | Y | A | E | K | E |
Query Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|   |
|
|
| . | . |   |   |   |   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|
|
|
|   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|   |
|   |   |
|   |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|
|
|
|   |
|
|
|
|
|
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|   |   |
|   |
|   |   |   |   |
|
Template Sequence |   |
I | R | V | A | I | N | G | Y | G | R | I | G | R | N | I | L | R | A | H | Y | E | G | G | K | S | H | D | I | E | I | V | A | I | N | D | L | G | D | P | K | T | N | A | H | L | T | R | Y | D | T | A | H | G | K | F | P | G | T | V | S | V | N | G | S | Y | M | V | V | N | G | D | K | I | R | V | D | A | N | R | N |
Template Known Secondary structure |   |
 |  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
| S | S |  |  |  |  |  |  |  |
| S | S |
|  |  |  |  |  |  |  |  |  |  |  | T | T | T |  |  |
| S | S |
|  |  |  |  | T | T |  |  |  |  | T | T |  |  |  |  |  |  |
|
| S |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
  |
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | |
|
. | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
| . | . |
|  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | K | N | I | P | W | K | A | K | G | A | E | I | I | V | E | C | T | G | F | Y | T | S | A | E | K | S | Q | A | H | L | D | A | G | A | K | K | V | L | I | S | A | P | A | G | E | M | . |
. |
K | T | I | V | Y | N | V | N | D | D | T | L | D | G | N | D | T | I | V | S | V | A | S | C | T | T | N | C | L | A | P |
Query Conservation |   |
|   |   |
|   |
|   |   |   |
|
|
|
|
|
|
|   |
|
|   |
|   |   |   |   |   |
|   |   |
|
|   |
|
|
|
|   |
|
|
|
|
|
|   |   |
|
| . | . |
|   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
Template Conservation |   |
|   |   |
|
|
|   |   |   |
|
|
|   |
|
|
|   |
|
|   |
|   |
|   |   |   |
|   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
|   |   |   |   |   |
|   |
|   |
|   |
|
|
|   |   |   |
|   |   |   |   |   |
|
|
|
|
|
| . | . | . | . | . | . | . | . |
Template Sequence |   |
P | A | Q | L | P | W | G | A | L | K | V | D | V | V | L | E | C | T | G | F | F | T | T | K | E | K | A | G | A | H | I | K | G | G | A | K | K | V | I | I | S | A | P | G | G | A | D | V | D | A | T | V | V | Y | G | V | N | H | G | T | L | K | S | T | D | T | V | I | S | N | A | D | . |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
G | G | G | S |
| T | T | T | T | T |
| S |  |  |  |  |
| S | S | S |
|
| S |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  | S | S |
|
|
| T | T | S | S |  |  |
|
| T | T | T | S | G | G | G |
|
| T | T |
|
|  |  |  |
|
|
| . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|  |  |  |
|
|
| . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | |
|
|
|
|
|
|
|
  |
  |   |
158 | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | A | K | A | L | H | D | S | F | G | I | E | V | G | T | M | T | T | I | H | A | Y | T | G | T |
Query Conservation |   |
  |
|
|   |
|   |   |   |
|
|
|   |   |   |   |
|
|
|
|
|
|   |
|   |   |
Alig confidence |   |
. | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . |   |   |
|
|
|   |   |
|   |
|
|
|
|
|
|   |
|
|   |
Template Sequence |   |
. |
. |
. |
. |
. |
. |
N | E | W | G | F | S | N | R | M | L | D | T | T | V | A | L | M | S | A |
Template Known Secondary structure |   |
. | . | . | . | . | . | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
. | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
316 | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . |
  |