Job Description P33898 Confidence 100.00% Date Thu Jan 5 11:52:40 GMT 2012 Rank 59 Aligned Residues 302 % Identity 19% Template c3uw3A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:aspartate-semialdehyde dehydrogenase; PDBTitle: crystal structure of an aspartate-semialdehyde dehydrogenase from2 burkholderia thailandensis Resolution 1.55 Å

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		2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		S	K	V	G	I	N	G	F	.	G	R	I	G	R	L	V	L	G	R	L	L	E	V	K	S	N	I	D	V	V	A	I	N	D	L	T	S	P	K	I	L	A	Y	L	L	K	H	D	S	N	Y	G	P	F	P	W	S	V	D	F	T	E	D	S	L	I	V	D	G	K	S	I	A	V	Y	A	E	K	E	A
Query Conservation										.
Alig confidence										.													.											.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation																							.											.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Sequence		M	N	V	G	L	V	G	W	R	G	M	V	G	S	V	L	M	Q	R	M	Q	.	E	E	G	D	F	D	L	I	E	P	.	.	.	.	.	.	.	.	.	.	V	F	F	S	T	S	N	A	G	G	K	A	.	.	.	.	.	.	.	.	.	.	P	S	F	A	K	N	E	T	T	L	K	D	A	T	S	I
Template Known Secondary structure								S	T	T	S												.		T	T	G	G	G	G	S			.	.	.	.	.	.	.	.	.	.					S	S		T	T	S	B		.	.	.	.	.	.	.	.	.	.		T	T			S			B				T	T
Template Predicted Secondary structure																							.											.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.											.	.	.	.	.	.	.	.	40	.	.	.											.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																					.	.									.	.	.																	.	.	.	.
Query SS confidence																																					.	.									.	.	.																	.	.	.	.
Query Sequence		K	N	I	P	W	K	A	K	G	A	E	I	I	V	E	C	T	G	F	Y	T	S	A	E	K	S	Q	A	H	L	D	A	G	A	K	.	.	K	V	L	I	S	A	P	A	.	.	.	G	E	M	K	T	I	V	Y	N	V	N	D	D	T	L	D	.	.	.	.	G	N	D	T	I	V	S	V	A	S	C	T
Query Conservation																																					.	.									.	.	.																	.	.	.	.
Alig confidence							.	.	.	.																											.	.									.	.	.																	.	.	.	.
Template Conservation							.	.	.	.
Template Sequence		D	D	L	K	K	.	.	.	.	C	D	V	I	I	T	C	Q	G	G	D	Y	T	N	D	V	F	P	K	L	R	A	A	G	W	N	G	Y	W	I	D	A	A	S	S	L	R	M	K	D	D	A	V	I	I	L	D	P	V	N	L	N	V	I	K	D	A	L	V	N	G	T	K	N	F	I	G	G	N	C	T
Template Known Secondary structure						T	.	.	.	.		S						S															T	T			S						S	S	T	T	T	T		T	T																			T	T
Template Predicted Secondary structure							.	.	.	.
Template SS confidence
		60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																																						.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	N	C	L	A	P	M	A	K	A	L	H	D	S	F	G	I	E	V	G	T	M	T	T	I	H	A	Y	T	G	T	Q	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	G	P	R	G	K	D	L
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	L	M	L	M	A	L	G	G	L	F	R	E	N	L	V	D	W	M	T	A	M	T	Y	Q	A	A	S	G	A	G	A	Q	N	M	R	E	L	L	A	Q	M	G	T	L	N	G	A	V	A	A	Q	L	A	D	P	A	S	A	I	L	D	I	D	R	R	V	L	A	A	M	N	G	D	A	M	P	T	S
Template Known Secondary structure															T	T											B		G	G	G	T																		T	T					T		T	T	S															S	T	T	S			T
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210													.	.	.	.	.	.	.	.	.	220	.	.	.	.							.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query Sequence		R	A	S	R	A	A	A	E	N	I	I	P	H	T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	A	A	K	A	I	G	L	V	I	P	E	L	S	G	.	.	.	.	.	.	K	L	K	G	H	A	Q	R	V	P	V	K	T	G	S	V	T	E	L	V	S	I	L	G	K	K	V	T	A	E	E	V
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation
Template Sequence		Q	F	G	V	P	L	A	G	S	L	I	P	W	I	D	K	D	L	G	N	G	M	S	R	E	E	W	K	G	G	A	E	T	N	K	I	L	G	K	P	A	M	G	E	P	G	S	V	P	V	D	G	L	C	V	R	I	G	A	M	R	C	H	S	Q	A	L	T	I	K	L	K	K	D	V	P	L	D	E	I
Template Known Secondary structure		T	T	S	S			T	T	S		B	S			S		B		S	S	S		B															T				T	T	S	T	T										B		S		S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.					.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																				.	.	.	.																																											.
Query SS confidence																				.	.	.	.																																											.
Query Sequence		N	N	A	L	K	Q	A	T	T	N	N	E	S	F	G	Y	T	D	.	.	.	.	E	E	I	V	S	S	D	I	I	G	S	H	F	G	S	V	F	D	A	T	Q	T	E	I	T	A	V	G	D	L	Q	L	V	K	T	V	A	W	Y	D	N	E	.	Y	G	F	V	T	Q	L	I	R	T	L	E	K	F	A
Query Conservation																				.	.	.	.																																											.
Alig confidence																				.	.	.	.																									.	.	.	.															.
Template Conservation																																																.	.	.	.
Template Sequence		N	G	I	L	A	S	A	N	D	W	V	K	V	V	P	N	E	R	E	A	S	M	R	D	L	S	P	A	K	V	T	G	T	L	S	V	P	V	G	R	L	R	K	L	A	M	.	.	.	.	G	G	E	Y	L	S	A	F	T	V	G	D	Q	L	L	W	G	A	A	E	P	L	R	R	M	L	R	I	L	L
Template Known Secondary structure							T	S		S	S						S	S								S	S					T	T	S	S											T	T	.	.	.	.		T	T										T	T
Template Predicted Secondary structure																																																.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.					.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		332
Predicted Secondary structure
Query SS confidence
Query Sequence		K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		372

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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