Job Description P33898 Confidence 99.98% Date Thu Jan 5 11:52:40 GMT 2012 Rank 71 Aligned Residues 299 % Identity 22% Template c3hskB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase; PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase2 with nadp from candida albicans Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure											.																																																		.	.
Query SS confidence											.																																																		.	.
Query Sequence		M	S	K	V	G	I	N	G	F	.	G	R	I	G	R	L	V	L	G	R	L	L	E	V	K	S	N	I	D	V	V	A	I	N	D	L	T	S	P	K	I	L	A	Y	L	L	K	H	D	S	N	Y	G	P	F	P	W	S	V	.	.	D	F	T	E	D	S	L	I	V	D	G	K	S	I	A	V	Y	A	E
Query Conservation											.																																																		.	.
Alig confidence											.													.													.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation																								.													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	K	K	A	G	V	L	G	A	T	G	S	V	G	Q	R	F	I	L	L	L	S	.	K	H	P	E	F	E	I	H	A	L	G	A	.	.	.	.	.	.	.	.	.	.	.	.	S	S	R	S	A	G	K	K	Y	K	D	A	A	S	W	K	Q	T	E	T	L	P	E	T	E	Q	D	I	V	V	Q	E	C
Template Known Secondary structure									T	T	T	S												.	T		T	T									.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	T	T	S	B										S	S								T		B				S
Template Predicted Secondary structure																								.													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.													.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	E	A	K	N	I	P	W	K	A	K	G	A	E	I	I	V	E	C	T	G	F	Y	T	S	A	E	K	S	Q	A	H	L	D	A	G	A	K	K	V	L	I	S	A	P	A	.	.	.	G	E	M	K	T	I	V	Y	N	V	N	D	D	T	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.																																				.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		K	P	E	G	N	F	L	.	.	.	.	E	C	D	V	V	F	S	G	L	D	A	D	V	A	G	D	I	E	K	S	F	V	E	A	G	L	A	V	V	S	N	A	K	N	Y	R	R	E	K	D	V	P	L	V	V	P	I	V	N	P	E	H	I	D	V	V	E	N	K	V	K	Q	A	V	S	K	G	G	K
Template Known Secondary structure		S	S	S	S	G	G	G	.	.	.	.	G		S																					T	T							S	S	T	T	T	T		T	T	S					T	T	T		G	G	G	G														T	S	S
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.					.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																														.																																																		.	.
Query SS confidence																														.																																																		.	.
Query Sequence		G	N	D	T	I	V	S	V	A	S	C	T	T	N	C	L	A	P	M	A	K	A	L	H	D	S	F	G	.	I	E	V	G	T	M	T	T	I	H	A	Y	T	G	T	Q	S	L	V	D	G	P	R	G	K	D	L	R	A	S	R	A	A	A	E	N	I	I	P	H	T	T	G	A	A	K	A	I	G	.	.
Query Conservation																														.																																																		.	.
Alig confidence																														.																.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	P	G	F	I	I	C	I	S	N	C	S	T	A	G	L	V	A	P	L	K	P	L	V	E	K	F	G	P	I	D	A	L	T	T	T	T	L	Q	A	I	S	P	G	.	.	.	.	.	.	.	.	.	.	.	.	V	S	G	M	D	I	L	D	N	I	V	P	Y	I	S	G	E	E	D	K	L	E	W	E
Template Known Secondary structure																			T	T																										.	.	.	.	.	.	.	.	.	.	.	.							T	T			B				T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.													190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
																	217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	I	P	E	L	S	G	K	L	K	G	H	A	Q	R	V	P	V	K	T	G	S	V	T	E	L	V	S	I	L	.	.	G	K	K	V	T	A	E	E	V	N	N	A	L	K	Q	A	T	T	N	N	E	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	K	I	L	G	G	V	N	A	E	G	T	E	F	V	P	I	P	E	S	E	M	K	V	S	A	Q	C	N	R	V	P	V	I	D	G	H	T	E	C	I	S	L	R	F	A	N	R	P	A	P	S	V	E	D	V	K	Q	C	L	R	E	Y	E	C	A	A	S	K	L	G	C	H	S	A	P	K	Q	T
Template Known Secondary structure						T					T	T	S	S	S						T	T	T											S		S	S											S	S	S	S																						T		S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
				269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure		.	.																																																	.
Query SS confidence		.	.																																																	.
Query Sequence		.	.	S	F	G	Y	T	D	E	E	I	V	S	S	D	I	I	G	S	H	F	G	S	V	F	D	A	T	Q	T	E	I	T	A	V	G	D	L	Q	L	V	K	T	V	A	W	Y	D	N	E	.	Y	G	F	V	T	Q	L	I	R	T	L	E	K	F	A	K
Query Conservation		.	.																																																	.
Alig confidence		.	.																								.	.	.	.																						.
Template Conservation																											.	.	.	.
Template Sequence		I	H	V	L	D	Q	P	D	R	P	Q	P	R	L	D	R	D	R	D	S	G	Y	G	V	S	.	.	.	.	V	G	R	I	R	E	D	S	L	L	D	F	K	M	V	V	L	S	H	N	T	I	I	G	A	A	G	A	G	I	L	I	A	E	I	L	K	A
Template Known Secondary structure							S	T	T								T	T	T	T	T	T	S	S			.	.	.	.								S	S	S	S													S
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.					.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions