Phyre 2 alignment of P33898 with c2yyyB

Job Description P33898
Confidence 100.00% Date Thu Jan 5 11:52:40 GMT 2012

Rank 22 Aligned Residues 310

% Identity 16% Template c2yyyB_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase

Resolution 1.85 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																				.																						.	.	.
Query SS confidence																																				.																						.	.	.
Query Sequence	S	K	V	G	I	N	G	F	G	R	I	G	R	L	V	L	G	R	L	L	E	V	K	S	N	I	D	V	V	A	I	N	D	L	T	.	S	P	K	I	L	A	Y	L	L	K	H	D	S	N	Y	G	P	F	P	W	S	.	.	.	V	D	F	T	E	D	S	L	I	V	D	G	K	S	I	A	V	Y	A	E
Query Conservation																																				.																						.	.	.
Alig confidence																					.															.																						.	.	.
Template Conservation																					.
Template Sequence	A	K	V	L	I	N	G	Y	G	S	I	G	K	R	V	A	D	A	V	S	.	M	Q	D	D	M	E	V	I	G	V	T	K	T	K	P	D	F	E	A	R	L	A	V	E	K	G	Y	K	L	F	V	A	I	P	D	N	E	R	V	K	L	F	E	D	A	G	I	P	V	E	G	T	I	L	D	I	I	E	D
Template Known Secondary structure									S												.		S	S	S									S	S		S									T	T						S	S													T						B	G	G	G	T	G	G	G
Template Predicted Secondary structure																					.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence	K	E	A	K	N	I	P	W	K	A	K	G	A	E	I	I	V	E	C	T	G	F	Y	T	S	A	E	K	S	Q	A	H	L	D	A	G	A	K	K	V	L	I	S	A	P	A	.	.	.	G	E	M	K	T	I	V	Y	N	V	N	D	D	T	L	D	G	N	D	T	I	V	S	V	A	S	C	T	T	N	C
Query Conservation																																															.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.																	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.																																																						.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	A	D	I	V	V	D	G	A	P	K	K	I	G	K	Q	N	L	E	N	I	Y	K	P	H	K	V	K	A	I	L	Q	G	G	E	K	A	K	D	V	E	D	N	F	N	A	L	W	S	Y	N	R	C	Y	.	G	K	D	Y	V	R	V	V	S	C	N	T	T	G
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.		S								T	T									T	T	T	T	T	T							T	T	S		G	G	G	S	S					T	T	T	T	T	T	T	T	T	.	T		S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.																																																						.
Template SS confidence
													82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.

	155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	A	P	M	A	K	A	L	H	D	S	F	G	I	E	V	G	T	M	T	T	I	H	A	Y	T	G	T	Q	S	L	V	D	G	P	R	G	K	D	L	R	A	S	R	A	A	A	E	N	I	I	P	H	T	T	G	A	A	K	A	I	G	L	V	I	P	E	L	S	G	K	L	K	G	H	A	Q	R	V	P
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.
Template Sequence	L	C	R	I	L	Y	A	I	N	S	I	A	D	I	K	K	A	R	I	V	L	V	R	R	A	A	D	P	N	D	D	K	T	G	P	V	.	.	.	.	.	.	.	N	A	I	T	P	N	P	V	T	V	P	S	H	H	G	P	D	V	V	S	V	V	P	E	F	E	G	K	I	L	T	S	A	V	I	V	P
Template Known Secondary structure										T	T	S													S	S		T	T		S	S				S	.	.	.	.	.	.	.	S					S	S	S	S	S	S		T										G	G	G	T	T	S									S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.
Template SS confidence
	149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.								.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.							.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence	V	K	T	G	S	V	T	E	L	V	S	I	L	G	K	K	V	T	A	E	E	V	N	N	A	L	K	Q	A	T	T	N	.	.	.	.	.	.	N	E	S	F	G	Y	T	D	E	E	I	V	S	S	D	I	I	G	S	H	F	G	S	V	F	D	A	T	Q	T	E	I	T	A	V	G	D	L	Q	L	V	K
Query Conservation																																	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.																	.
Template Conservation																																																							.
Template Sequence	T	T	L	M	H	M	H	T	L	M	V	E	V	D	G	D	V	S	R	D	D	I	L	E	A	I	K	K	T	P	R	I	I	T	V	R	A	E	D	G	F	S	S	T	A	K	I	I	E	Y	G	R	D	L	.	G	R	L	R	Y	D	I	N	E	L	V	V	W	E	E	S	I	N	V	L	E	N	E	I	F
Template Known Secondary structure			S												S														S	T	T						G	G	G	T			S												.	T		G	G	G				S					G	G	G					T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
	222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

	309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	V	A	W	Y	D	N	E	Y	G	F	V	T	Q	L	I	R	T	L	E	K	F	A	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	L	M	Q	A	V	H	Q	E	S	I	V	I	P	E	N	I	D	C	I	R	A	M	L	Q	M
Template Known Secondary structure							T	T	T	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
	301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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