Job Description P33898 Confidence 100.00% Date Thu Jan 5 11:52:40 GMT 2012 Rank 58 Aligned Residues 292 % Identity 21% Template c2yv3B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase; PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase from thermus2 thermophilus hb8 Resolution 2.70 Å

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		2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.														.
Query SS confidence										.														.
Query Sequence		S	K	V	G	I	N	G	F	.	G	R	I	G	R	L	V	L	G	R	L	L	E	.	V	K	S	N	I	D	V	V	A	I	N	D	L	T	S	P	K	I	L	A	Y	L	L	K	H	D	S	N	Y	G	P	F	P	W	S	V	D	F	T	E	D	S	L	I	V	D	G	K	S	I	A	V	Y	A	E	K	E
Query Conservation										.														.
Alig confidence										.														.												.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	V	A	V	V	G	A	T	G	A	V	G	R	E	I	L	K	V	L	E	A	R	N	F	P	L	S	E	L	R	L	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	R	S	A	G	V	.	.	.	R	L	A	F	R	G	E	E	I	P	V	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	T	S													T	T											.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	S	S		.	.	.					T	T						.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.														.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence		A	K	N	I	P	W	K	A	K	G	A	E	I	I	V	E	C	T	G	F	Y	T	S	A	E	K	S	Q	A	H	L	D	A	G	A	K	K	V	L	I	S	A	P	A	.	.	.	G	E	M	K	T	I	V	Y	N	V	N	D	D	T	L	D	G	N	D	T	I	V	S	V	A	S	C	T	T	N	C	L	A
Query Conservation																																														.	.	.
Alig confidence		.																																												.	.	.
Template Conservation		.
Template Sequence		.	E	P	L	P	E	G	P	L	P	V	D	L	V	L	A	S	A	G	G	G	I	S	R	A	K	A	L	V	W	A	E	G	G	A	L	V	V	D	N	S	S	A	W	R	Y	E	P	W	V	P	L	V	V	P	E	V	N	R	E	K	I	F	Q	H	R	G	I	I	A	N	P	N	C	T	T	A	I	L	A
Template Known Secondary structure		.					S	S			S		S						S		S													T	T							S	T	T	T	T	T		T	T	S		B							G	G	G	G	G	G		S	S
Template Predicted Secondary structure		.
Template SS confidence
			53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.													.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210													.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	M	A	K	A	L	H	D	S	F	G	I	E	V	G	T	M	T	T	I	H	A	Y	T	G	T	Q	S	L	.	.	.	.	.	.	.	.	.	.	.	.	V	D	G	P	R	G	K	D	L	R	A	S	R	A	A	A	E	N	I	I	P	H	T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	A	A
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	A	L	W	P	L	H	R	A	F	Q	A	K	R	V	I	V	A	T	Y	Q	A	A	S	G	A	G	A	K	A	M	E	E	L	L	T	E	T	H	R	F	L	H	G	E	A	P	K	A	E	A	F	A	H	P	L	P	F	N	V	I	P	H	I	D	A	F	Q	E	N	G	Y	T	R	E	E	M	K	V	V
Template Known Secondary structure									T	T	T											B		G	G	G	T		S															T	T						S	S	S	S	S			T	T			B	S			S		B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280						.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.
Query Sequence		K	A	I	G	L	V	I	P	E	L	S	G	K	L	K	G	H	A	Q	R	V	P	V	K	T	G	S	V	T	E	L	V	S	I	L	G	K	K	V	T	A	E	E	V	N	N	A	L	K	Q	A	T	T	N	N	E	S	F	G	Y	T	D	E	E	I	V	S	S	.	.	.	.	.	D	I	I	G	S	H	F
Query Conservation																																																																						.	.	.	.	.
Alig confidence																																																					.	.	.	.														.	.	.	.	.
Template Conservation																																																					.	.	.	.
Template Sequence		W	E	T	H	K	I	F	G	D	D	T	I	R	I	S	A	T	A	V	R	V	P	T	L	R	A	H	A	E	A	V	S	V	E	F	A	R	P	V	T	P	E	A	A	R	E	V	L	K	E	A	.	.	.	.	P	G	V	E	V	V	D	E	P	E	A	K	R	Y	P	M	P	L	T	A	S	G	K	W	D
Template Known Secondary structure									T		S			B							B		S		S	S											S	S												T	T	S	.	.	.	.	T	T						B	G	G	G	T	B				S	T	T	T	T	T		S	S
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.					.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		G	S	V	F	D	A	T	Q	T	E	I	T	A	V	G	D	L	Q	L	V	K	T	V	A	W	Y	D	N	.	E	Y	G	F	V	T	Q	L	I	R	T	L	E	K	F
Query Conservation																														.
Alig confidence													.	.	.	.														.
Template Conservation													.	.	.	.
Template Sequence		V	E	V	G	R	I	R	K	S	L	A	.	.	.	.	F	E	N	G	L	D	F	F	V	V	G	D	Q	L	L	K	G	A	A	L	N	A	V	Q	I	A	E	E	W
Template Known Secondary structure											S	S	.	.	.	.	S	T	T										T	T
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.					.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions