Job Description P33898 Confidence 100.00% Date Thu Jan 5 11:52:40 GMT 2012 Rank 56 Aligned Residues 298 % Identity 21% Template c2qz9B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase; PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase2 ii from vibrio cholerae Resolution 2.20 Å

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		2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.																.
Query SS confidence										.																.
Query Sequence		S	K	V	G	I	N	G	F	.	G	R	I	G	R	L	V	L	G	R	L	L	E	V	K	.	S	N	I	D	V	V	A	I	N	D	L	T	S	P	K	I	L	A	Y	L	L	K	H	D	S	N	Y	G	P	F	P	W	S	V	D	F	T	E	D	S	L	I	V	D	G	K	S	I	A	V	Y	A	E	K	E
Query Conservation										.																.
Alig confidence										.																.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	N	V	A	I	F	G	A	T	G	A	V	G	E	T	M	L	E	V	L	Q	E	R	E	F	P	V	D	E	L	F	L	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	R	S	E	G	K	T	Y	R	F	N	G	K	T	V	R	V	Q	N	V	E	E
Template Known Secondary structure								T	T	T	S													T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	T	T						T	T								G	G	G
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.																								40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																														.	.	.																	.	.
Query SS confidence																																														.	.	.																	.	.
Query Sequence		A	K	N	I	P	W	K	A	K	G	A	E	I	I	V	E	C	T	G	F	Y	T	S	A	E	K	S	Q	A	H	L	D	A	G	A	K	K	V	L	I	S	A	P	A	.	.	.	G	E	M	K	T	I	V	Y	N	V	N	D	D	T	L	D	.	.	G	N	D	T	I	V	S	V	A	S	C	T	T	N	C
Query Conservation																																														.	.	.																	.	.
Alig confidence		.	.	.	.	.																																								.	.	.																	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	F	D	W	S	Q	V	H	I	A	L	F	S	A	G	G	E	L	S	A	K	W	A	P	I	A	A	E	A	G	V	V	V	I	D	N	T	S	H	F	R	Y	D	Y	D	I	P	L	V	V	P	E	V	N	P	E	A	I	A	E	F	R	N	R	N	I	I	A	N	P	N	C	S	T	I	Q
Template Known Secondary structure		.	.	.	.	.			G	G	G		S						S															T	T							S	S	T	T	T	T		T	T	S		B			T	T	T		G	G	G	G	G	G	G	G	T	T	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.													.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query Sequence		L	A	P	M	A	K	A	L	H	D	S	F	G	I	E	V	G	T	M	T	T	I	H	A	Y	T	G	T	Q	S	L	V	.	.	.	.	.	.	.	.	.	.	.	.	D	G	P	R	G	K	D	L	R	A	S	R	A	A	A	E	N	I	I	P	H	T	T	G	A	A	K	A	.	.	.	.	.	.	.	.
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	L	V	A	L	K	P	I	Y	D	A	V	G	I	E	R	I	N	V	T	T	Y	Q	S	V	S	G	A	G	K	A	G	I	D	E	L	A	G	Q	T	A	K	L	L	N	G	Y	P	A	E	T	N	T	F	S	Q	Q	I	A	F	N	C	I	P	Q	I	D	Q	F	M	D	N	G	Y	T	K	E	E	M	K
Template Known Secondary structure																										G	G	G	G																T	T	T						S	S	S	S	S			T	T			B	S			S		B		T	T	S	S	B
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
						215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	I	G	L	V	I	P	E	L	S	G	K	L	K	G	H	A	Q	R	V	P	V	K	T	G	S	V	T	E	L	V	S	I	L	G	K	K	V	T	A	E	E	V	N	N	A	L	K	Q	A	T	T	N	N	E	S	F	G	Y	T	D	E	E	I	V	S	S	D	I	I	G	S	H	F	G	S	V
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																																		.
Template Conservation																																																							.
Template Sequence		M	V	W	E	T	Q	K	I	F	N	D	P	S	I	M	V	N	P	T	C	V	R	V	P	V	F	Y	G	H	A	E	A	V	H	V	E	T	R	A	P	I	D	A	E	Q	V	M	D	M	L	E	Q	T	.	D	G	I	E	L	F	R	G	A	D	F	P	T	Q	V	R	D	A	G	G	K	D	H	V	L	V
Template Known Secondary structure										T	T		T	T									B		S		S	S											S	S													T	S	.	T	T						T	T										T	T		S	S
Template Predicted Secondary structure																																																							.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		F	D	A	T	Q	T	E	I	T	A	V	G	D	L	Q	L	V	K	T	V	A	W	Y	D	N	.	E	Y	G	F	V	T	Q	L	I	R	T	L	E	K	F	A	K
Query Conservation																											.
Alig confidence										.	.	.	.														.
Template Conservation										.	.	.	.
Template Sequence		G	R	V	R	N	D	I	S	.	.	.	.	H	H	S	G	I	N	L	W	V	V	A	D	N	V	R	K	G	A	A	T	N	A	V	Q	I	A	E	L	L	V	R
Template Known Secondary structure								T	T	.	.	.	.	S	S	S										T	T	T	T	T	T
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.					.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions