Job Description P33898 Confidence 100.00% Date Thu Jan 5 11:52:40 GMT 2012 Rank 61 Aligned Residues 292 % Identity 18% Template c2gz3D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:aspartate beta-semialdehyde dehydrogenase; PDBTitle: structure of aspartate semialdehyde dehydrogenase (asadh) from2 streptococcus pneumoniae complexed with nadp and aspartate-3 semialdehyde Resolution 2.10 Å

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		3	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure									.																.
Query SS confidence									.																.
Query Sequence		K	V	G	I	N	G	F	.	G	R	I	G	R	L	V	L	G	R	L	L	E	V	K	.	S	N	I	D	V	V	A	I	N	D	L	T	S	P	K	I	L	A	Y	L	L	K	H	D	S	N	Y	G	P	F	P	W	S	V	D	F	T	E	D	S	L	I	V	D	G	K	S	I	A	V	Y	A	E	K	E	A
Query Conservation									.																.
Alig confidence									.																.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Sequence		T	V	A	V	V	G	A	T	G	A	V	G	A	Q	M	I	K	M	L	E	E	S	T	L	P	I	D	K	I	R	Y	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	R	S	A	G	K	S	L	K	F	K	D	Q	D	I	T	I	E	E	T	T	E	.
Template Known Secondary structure							T	T	T	S												T		S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	T	T						T	T										T	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																								.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		K	N	I	P	W	K	A	K	G	A	E	I	I	V	E	C	T	G	F	Y	T	S	A	E	K	S	Q	A	H	L	D	A	G	A	K	K	V	L	I	S	A	P	A	.	.	.	G	E	M	K	T	I	V	Y	N	V	N	D	D	T	L	D	G	N	D	T	I	V	S	V	A	S	C	T	T	N	C	L	A	P
Query Conservation																																													.	.	.
Alig confidence		.	.	.	.																																								.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	T	A	F	E	G	V	D	I	A	L	F	S	A	G	S	S	T	S	A	K	Y	A	P	Y	A	V	K	A	G	V	V	V	V	D	N	T	S	Y	F	R	Q	N	P	D	V	P	L	V	V	P	E	V	N	A	H	A	L	D	A	H	N	G	I	I	A	C	P	N	C	S	T	I	Q	M	M	V
Template Known Secondary structure		.	.	.	.	T	T	T	T	T		S						S																T							S	S	T	T	T	T		T	T	S		B							G	G	G	G	G	G			S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.																									.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	K	A	L	H	D	S	F	G	I	E	V	G	T	M	T	T	I	H	A	Y	T	G	T	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	D	G	P	R	G	K	D	L	R	A	S	R	A	A	A	E	N	I	I	P	H	T	T	G	A	A	K
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation																																																											.
Template Sequence		A	L	E	P	V	R	Q	K	W	G	L	D	R	I	I	V	S	T	Y	Q	A	V	S	G	A	G	M	G	A	I	L	E	T	Q	R	E	L	R	E	V	L	N	D	G	V	K	P	C	D	L	H	A	E	I	L	P	S	.	G	G	D	K	K	H	Y	P	I	A	F	N	A	L	P	Q	I	D	V	F	T	D
Template Known Secondary structure																							G	G	G	G																						G	G	G				S	S	S	S		.	T	T	S	S						T	T			B	S			S		B		T
Template Predicted Secondary structure																																																											.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		214													.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.
Query Sequence		A	.	.	.	.	.	.	.	.	.	.	.	.	I	G	L	V	I	P	E	L	S	G	K	L	K	G	H	A	Q	R	V	P	V	K	T	G	S	V	T	E	L	V	S	I	L	G	K	K	V	T	A	E	E	V	N	N	A	L	K	Q	A	T	T	N	N	.	.	E	S	F	G	Y	T	D	E	E	I	V	S
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.												.
Template Conservation																																																																																	.
Template Sequence		N	D	Y	T	Y	E	E	M	K	M	T	K	E	T	K	K	I	M	E	D	D	S	I	A	V	S	A	T	C	V	R	I	P	V	L	S	A	H	S	E	S	V	Y	I	E	T	K	E	V	A	P	I	E	E	V	K	A	A	I	A	A	F	P	G	A	V	L	E	D	D	V	A	H	Q	I	Y	P	Q	A	.
Template Known Secondary structure		T	S	S	B														T	T		T	T	S										S		S	S											S	S													T	S	T	T						B	G	G	G	T	B					.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		280	.	.	.	.	.	.	.	.	.	290					.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure													.	.	.	.																											.
Query SS confidence													.	.	.	.																											.
Query Sequence		S	D	I	I	G	S	H	F	G	S	V	.	.	.	.	F	D	A	T	Q	T	E	I	T	A	V	G	D	L	Q	L	V	K	T	V	A	W	Y	D	N	E	.	Y	G	F	V	T	Q	L	I	R	T	L	E	K	F	A	K
Query Conservation													.	.	.	.																											.
Alig confidence													.	.	.	.						.	.	.	.	.	.	.	.														.
Template Conservation																						.	.	.	.	.	.	.	.
Template Sequence		I	N	A	V	G	S	R	D	T	F	V	G	R	I	R	K	D	L	D	A	.	.	.	.	.	.	.	.	E	K	G	I	H	M	W	V	V	S	D	N	L	L	K	G	A	A	W	N	S	V	Q	I	A	E	T	L	H	E
Template Known Secondary structure					T	T		S	S										S	S		.	.	.	.	.	.	.	.	T	T										T	T	T	T	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.									.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions