Job Description P33898 Confidence 100.00% Date Thu Jan 5 11:52:40 GMT 2012 Rank 21 Aligned Residues 326 % Identity 52% Template c2gd1P_ PDB info PDB header:oxidoreductase(aldehyde(d)-nad(a)) Chain: P: PDB Molecule:apo-d-glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: coenzyme-induced conformational changes in glyceraldehyde-3-2 phosphate dehydrogenase from bacillus stearothermophillus Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	V	G	I	N	G	F	G	R	I	G	R	L	V	L	G	R	L	L	E	V	K	S	N	I	D	V	V	A	I	N	D	L	T	S	P	K	I	L	A	Y	L	L	K	H	D	S	N	Y	G	P	F	P	W	S	V	D	F	T	E	D	S	L	I	V	D	G	K	S	I	A	V	Y	A	E	K	E	A	K
Query Conservation
Alig confidence																						.
Template Conservation																						.
Template Sequence		V	K	V	G	I	N	G	F	G	R	I	G	R	N	V	F	R	A	A	L	.	K	N	P	D	I	E	V	V	A	V	N	D	L	T	D	A	N	T	L	A	H	L	L	K	Y	D	S	V	H	G	R	L	D	A	E	V	S	V	N	G	N	N	L	V	V	N	G	K	E	I	I	V	K	A	E	R	D	P	E
Template Known Secondary structure										S											T	.	T		T	T									S	S													T	T	T				S	S						T	T					T	T									S		G	G
Template Predicted Secondary structure																						.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.																		.
Query SS confidence																																												.																		.
Query Sequence		N	I	P	W	K	A	K	G	A	E	I	I	V	E	C	T	G	F	Y	T	S	A	E	K	S	Q	A	H	L	D	A	G	A	K	K	V	L	I	S	A	P	A	.	G	E	M	K	T	I	V	Y	N	V	N	D	D	T	L	D	G	.	N	D	T	I	V	S	V	A	S	C	T	T	N	C	L	A	P	M	A
Query Conservation																																												.																		.
Alig confidence																																												.																		.
Template Conservation
Template Sequence		N	L	A	W	G	E	I	G	V	D	I	V	V	E	S	T	G	R	F	T	K	R	E	D	A	A	K	H	L	E	A	G	A	K	K	V	I	I	S	A	P	A	K	N	E	D	I	T	I	V	M	G	V	N	Q	D	K	Y	D	P	K	A	H	H	V	I	S	N	A	S	C	T	T	N	C	L	A	P	F	A
Template Known Secondary structure		G							T								S	S	S			B					T					T	T		S					S	S			B	S		S					T	T	T	S	G	G	G			T	T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	H	D	S	F	G	I	E	V	G	T	M	T	T	I	H	A	Y	T	G	T	Q	S	L	V	D	G	P	R	G	K	D	L	R	A	S	R	A	A	A	E	N	I	I	P	H	T	T	G	A	A	K	A	I	G	L	V	I	P	E	L	S	G	K	L	K	G	H	A	Q	R	V	P	V	K	T	G	S
Query Conservation
Alig confidence																																	.
Template Conservation																																	.
Template Sequence		K	V	L	H	E	Q	F	G	I	V	R	G	M	M	T	T	V	H	S	Y	T	N	D	Q	R	I	L	D	L	P	H	.	K	D	L	R	R	A	R	A	A	A	E	S	I	I	P	T	T	T	G	A	A	K	A	V	A	L	V	L	P	E	L	K	G	K	L	N	G	M	A	M	R	V	P	T	P	N	V	S
Template Known Secondary structure																							T	T	S	B	S	S	S				.	S	S	S	S	T	T	S	B	T	T	T	S							S	T	T	G	G	G	T	T	T	S	G	G	G	T	T	T									S		S	S
Template Predicted Secondary structure																																	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		V	T	E	L	V	S	I	L	G	K	K	V	T	A	E	E	V	N	N	A	L	K	Q	A	T	T	N	.	.	N	E	S	F	G	Y	T	D	E	E	I	V	S	S	D	I	I	G	S	H	F	G	S	V	F	D	A	T	Q	T	E	I	T	A	V	G	D	L	Q	L	V	K	T	V	A	W	Y	D	N	E	Y
Query Conservation																													.	.
Alig confidence																													.	.																																		.	.	.
Template Conservation																																																																.	.	.
Template Sequence		V	V	D	L	V	A	E	L	E	K	E	V	T	V	E	E	V	N	A	A	L	K	A	A	A	E	G	E	L	K	G	I	L	A	Y	S	E	E	P	L	V	S	R	D	Y	N	G	S	T	V	S	S	T	I	D	A	L	S	T	M	V	I	.	.	.	D	G	K	M	V	K	V	V	S	W	Y	D	N	E	T
Template Known Secondary structure										S	S																	T	T	T	B	T	T						S				G	G	G	G	T	T			S	S					G	G	G					.	.	.	T	T	T										T	T
Template Predicted Secondary structure																																																																.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300				.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	V	T	Q	L	I	R	T	L	E	K	F	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	S	H	R	V	V	D	L	A	A	Y	I	A	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions