Job Description P33898 Confidence 100.00% Date Thu Jan 5 11:52:40 GMT 2012 Rank 28 Aligned Residues 305 % Identity 16% Template c2czcD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 pyrococcus horikoshii ot3 Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.																								.
Query SS confidence																																				.																								.
Query Sequence		S	K	V	G	I	N	G	F	G	R	I	G	R	L	V	L	G	R	L	L	E	V	K	S	N	I	D	V	V	A	I	N	D	L	.	T	S	P	K	I	L	A	Y	L	L	K	H	D	S	N	Y	G	P	F	P	W	S	V	.	D	F	T	E	D	S	L	I	V	D	G	K	S	I	A	V	Y	A	E	K	E
Query Conservation																																				.																								.
Alig confidence																						.														.																								.												.	.	.	.	.	.	.	.	.	.
Template Conservation																						.																																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		V	K	V	G	V	N	G	Y	G	T	I	G	K	R	V	A	Y	A	V	T	.	K	Q	D	D	M	E	L	I	G	I	T	K	T	K	P	D	F	E	A	Y	R	A	K	E	L	G	I	P	V	Y	A	A	S	E	E	F	I	P	R	F	E	K	E	G	F	E	V	A	G	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S												.	T		S	S									S	S											T	T						S	S	G	G	G							T	T				S		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.																																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		A	K	N	I	P	W	K	A	K	G	A	E	I	I	V	E	C	T	G	F	Y	T	S	A	E	K	S	Q	A	H	L	D	A	G	A	K	K	V	L	I	S	A	P	A	G	E	M	K	T	I	V	Y	N	V	N	D	D	T	L	D	G	.	N	D	T	I	V	S	V	A	S	C	T	T	N	C	L	A	P	M
Query Conservation																																																															.
Alig confidence		.	.																																																												.
Template Conservation		.	.
Template Sequence		.	.	T	L	N	D	L	L	E	K	V	D	I	I	V	D	A	T	P	G	G	I	G	A	K	N	K	P	L	Y	E	K	A	G	V	K	A	I	F	Q	G	G	E	K	A	D	V	A	E	V	S	F	V	A	Q	A	N	Y	E	A	A	L	G	K	N	Y	V	R	V	V	S	C	N	T	T	G	L	V	R	T
Template Known Secondary structure		.	.	B						T	T		S							S	T	T												T	T							T	T	S		G	G	G	S	S									G	G	G	G	T	T		S
Template Predicted Secondary structure		.	.
Template SS confidence
				72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	A	L	H	D	S	F	G	I	E	V	G	T	M	T	T	I	H	A	Y	T	G	T	Q	S	L	V	D	G	P	R	G	K	D	L	R	A	S	R	A	A	A	E	N	I	I	P	H	T	T	G	A	A	K	A	I	G	L	V	I	P	E	L	S	G	K	L	K	G	H	A	Q	R	V	P	V	K	T	G
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	A	I	R	E	Y	A	D	Y	V	Y	A	V	M	I	R	R	A	A	D	P	N	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	G	P	I	N	A	I	K	P	T	V	E	V	P	S	H	H	G	P	D	V	Q	T	V	I	P	I	N	I	E	T	M	A	F	V	V	P	T	T	L	M
Template Known Secondary structure						G	G	G												S	S		T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	S				S	S							S	S	S		T						T	T	T	S												S			S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.														.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.							.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																												.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.
Query Sequence		S	V	T	E	L	V	S	I	L	G	K	K	V	T	A	E	E	V	N	N	A	L	K	Q	A	T	.	.	.	.	.	.	T	N	N	E	S	F	G	Y	T	D	E	E	I	V	S	S	D	I	I	G	S	H	F	G	S	V	F	D	A	T	Q	T	E	I	T	A	V	G	D	L	Q	L	V	K	T	V	A	W
Query Conservation																												.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.																		.
Template Conservation																																																			.
Template Sequence		H	V	H	S	V	M	V	E	L	K	K	P	L	T	K	D	D	V	I	D	I	F	E	N	T	T	R	V	L	L	F	E	K	E	K	G	F	D	S	T	A	Q	I	I	E	F	A	R	D	.	L	H	R	E	W	N	N	L	Y	E	I	A	V	W	K	E	S	I	N	I	K	G	N	R	L	F	Y	I	Q	A
Template Known Secondary structure											S	S													T	S	T	T						G	G	G	T			S											.	T	T		G	G	G				S					G	G	G					T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	N	E	Y	G	F	V	T	Q	L	I	R	T	L	E	K	F	A	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	H	Q	E	S	D	V	I	P	E	N	I	D	A	I	R	A	M	F	E	L
Template Known Secondary structure				T	T	T	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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