Job Description P33898 Confidence 100.00% Date Thu Jan 5 11:52:40 GMT 2012 Rank 66 Aligned Residues 298 % Identity 18% Template c1mb4B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase; PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase2 from vibrio cholerae with nadp and s-methyl-l-cysteine3 sulfoxide Resolution 1.84 Å

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		2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		S	K	V	G	I	N	G	F	.	G	R	I	G	R	L	V	L	G	R	L	L	E	V	K	S	N	I	D	V	V	A	I	N	D	L	T	S	P	K	I	L	A	Y	L	L	K	H	D	S	N	Y	G	P	F	P	W	S	V	D	F	T	E	D	S	L	I	V	D	G	K	S	I	A	V	Y	A	E	K	E	A
Query Conservation										.
Alig confidence										.													.											.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Conservation																							.											.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	V	G	L	V	G	W	R	G	M	V	G	S	V	L	M	Q	R	M	V	.	E	E	R	D	F	D	L	I	E	P	.	.	.	.	.	.	.	.	.	.	V	F	F	S	T	S	Q	I	G	V	P	A	P	N	F	.	.	.	.	.	.	.	.	.	.	G	K	D	A	G	M	L	H	D	A	F	D	I
Template Known Secondary structure								S	T	T	S												.		T	T	G	G	G	T	S			.	.	.	.	.	.	.	.	.	.					S	S		T	T	S	B				S	.	.	.	.	.	.	.	.	.	.	S	S				B				T	T
Template Predicted Secondary structure																							.											.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.											.	.	.	.	.	.	.	.	40	.	.	.	.	.	.											.	.	.	50	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																					.	.									.	.	.																	.	.	.	.
Query SS confidence																																					.	.									.	.	.																	.	.	.	.
Query Sequence		K	N	I	P	W	K	A	K	G	A	E	I	I	V	E	C	T	G	F	Y	T	S	A	E	K	S	Q	A	H	L	D	A	G	A	K	.	.	K	V	L	I	S	A	P	A	.	.	.	G	E	M	K	T	I	V	Y	N	V	N	D	D	T	L	D	.	.	.	.	G	N	D	T	I	V	S	V	A	S	C	T
Query Conservation																																					.	.									.	.	.																	.	.	.	.
Alig confidence							.	.	.	.																											.	.									.	.	.																	.	.	.	.
Template Conservation							.	.	.	.
Template Sequence		E	S	L	K	Q	.	.	.	.	L	D	A	V	I	T	C	Q	G	G	S	Y	T	E	K	V	Y	P	A	L	R	Q	A	G	W	K	G	Y	W	I	D	A	A	S	T	L	R	M	D	K	E	A	I	I	T	L	D	P	V	N	L	K	Q	I	L	H	G	I	H	H	G	T	K	T	F	V	G	G	N	C	T
Template Known Secondary structure					T	T	.	.	.	.		S						S															T	T			S					S	S	S	T	T	T	T		T	T																		T	T	T
Template Predicted Secondary structure							.	.	.	.
Template SS confidence
		60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																																						.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	N	C	L	A	P	M	A	K	A	L	H	D	S	F	G	I	E	V	G	T	M	T	T	I	H	A	Y	T	G	T	Q	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	G	P	R	G	K	D	L
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	L	M	L	M	A	L	G	G	L	Y	E	R	G	L	V	E	W	M	S	A	M	T	Y	Q	A	A	S	G	A	G	A	Q	N	M	R	E	L	I	S	Q	M	G	V	I	N	D	A	V	S	S	E	L	A	N	P	A	S	S	I	L	D	I	D	K	K	V	A	E	T	M	R	S	G	S	F	P	T	D
Template Known Secondary structure															T	T													G	G	G	G																										T	T	S															S	T	T	S			T
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.						.	.	210	.	.	.	.	.	.	.	.										.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure															.	.	.	.	.												.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.												.	.	.	.	.	.	.	.	.
Query Sequence		R	A	S	R	A	A	A	E	N	I	I	P	H	.	.	.	.	.	T	T	G	A	A	K	A	I	G	L	V	.	.	.	.	.	.	.	.	.	I	P	E	L	S	G	K	L	K	G	H	A	Q	R	V	P	V	K	T	G	S	V	T	E	L	V	S	I	L	G	K	K	V	T	A	E	E	V	N	N	A	L
Query Conservation															.	.	.	.	.												.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	F	G	V	P	L	A	G	S	L	I	P	W	I	D	V	K	R	D	N	G	Q	S	K	E	E	W	K	A	G	V	E	A	N	K	I	L	G	L	Q	D	S	P	V	P	I	D	G	T	C	V	R	I	G	A	M	R	C	H	S	Q	A	L	T	I	K	L	K	Q	N	I	P	L	D	E	I	E	E	M	I
Template Known Secondary structure		T	T	S	S			T	T	S		B	S			S		B		T	T	S		B															T		T	T	S												S		S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.					.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290					.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																.	.	.	.																	.	.	.	.																											.
Query SS confidence																.	.	.	.																	.	.	.	.																											.
Query Sequence		K	Q	A	T	T	N	N	E	S	F	G	Y	T	D	.	.	.	.	E	E	I	V	S	S	D	I	I	G	S	H	F	G	S	V	.	.	.	.	F	D	A	T	Q	T	E	I	T	A	V	G	D	L	Q	L	V	K	T	V	A	W	Y	D	N	E	.	Y	G	F	V	T	Q	L	I	R	T	L	E	K	F	A
Query Conservation																.	.	.	.																	.	.	.	.																											.
Alig confidence																.	.	.	.																	.	.	.	.						.	.	.	.	.	.	.	.														.
Template Conservation																																													.	.	.	.	.	.	.	.
Template Sequence		A	T	H	N	D	W	V	K	V	I	P	N	E	R	D	I	T	A	R	E	L	T	P	A	K	V	T	G	T	L	S	V	P	V	G	R	L	R	K	M	A	M	G	.	.	.	.	.	.	.	.	D	D	F	L	N	A	F	T	V	G	D	Q	L	L	W	G	A	A	E	P	L	R	R	T	L	R	I	I	L
Template Known Secondary structure			T	T		S	S						S									S	S					T	T	S												T	T		.	.	.	.	.	.	.	.												T	T	T	T	T	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.									.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		332
Predicted Secondary structure
Query SS confidence
Query Sequence		K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		368

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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