Job Description P33898 Confidence 100.00% Date Thu Jan 5 11:52:40 GMT 2012 Rank 1 Aligned Residues 328 % Identity 45% Template c1i32D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.				.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.									.	.	.	.	.
Predicted Secondary structure																								.	.	.														.																													.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.														.																													.	.	.	.	.	.	.	.
Query Sequence		S	K	V	G	I	N	G	F	G	R	I	G	R	L	V	L	G	R	L	L	E	V	.	.	.	K	S	N	I	D	V	V	A	I	N	D	L	T	.	S	P	K	I	L	A	Y	L	L	K	H	D	S	N	Y	G	P	F	P	W	S	V	D	F	T	E	D	S	.	.	.	.	.	.	.	.	L	I	V	D	G
Query Conservation																								.	.	.														.																													.	.	.	.	.	.	.	.
Alig confidence																								.	.	.														.																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	V	G	I	N	G	F	G	R	I	G	R	M	V	F	Q	A	I	C	D	Q	G	L	I	G	T	E	I	D	V	V	A	V	V	D	M	S	T	N	A	E	Y	F	A	Y	Q	M	K	H	D	T	V	H	G	R	P	K	Y	T	V	E	A	V	K	S	S	P	S	V	E	T	A	D	V	L	V	V	N	G
Template Known Secondary structure										S													T	T		B	T	T	T									S															T	T	T		S		S	S							S	S	T	T		S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.
Predicted Secondary structure						.																																																		.																			.
Query SS confidence						.																																																		.																			.
Query Sequence		K	S	I	A	.	V	Y	A	E	K	E	A	K	N	I	P	W	K	A	K	G	A	E	I	I	V	E	C	T	G	F	Y	T	S	A	E	K	S	Q	A	H	L	D	A	G	A	K	K	V	L	I	S	A	P	.	A	G	E	M	K	T	I	V	Y	N	V	N	D	D	T	L	D	G	.	N	D	T	I	V	S
Query Conservation						.																																																		.																			.
Alig confidence						.																																																		.																			.
Template Conservation
Template Sequence		H	R	I	K	C	V	K	A	Q	R	N	P	A	D	L	P	W	G	K	L	G	V	D	Y	V	I	E	S	T	G	L	F	T	D	K	L	K	A	E	G	H	I	K	G	G	A	K	K	V	V	I	S	A	P	A	S	G	G	A	K	T	I	V	M	G	V	N	Q	H	E	Y	S	P	A	S	H	H	V	V	S
Template Known Secondary structure											S	S	G	G	G	S						T								S	S	S			B					T					T	T		S					S	S			B	S	S						T	T	T	S	G	G	G			T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		V	A	S	C	T	T	N	C	L	A	P	M	A	K	A	L	.	H	D	S	F	G	I	E	V	G	T	M	T	T	I	H	A	Y	T	G	T	Q	S	L	V	D	G	P	R	G	K	D	L	R	A	S	R	A	A	A	E	N	I	I	P	H	T	T	G	A	A	K	A	I	G	L	V	I	P	E	L	S	G	K
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		N	A	S	C	T	T	N	C	L	A	P	I	V	H	V	L	T	K	E	N	F	G	I	E	T	G	L	M	T	T	I	H	S	Y	T	A	T	Q	K	T	V	D	G	V	S	L	K	D	W	R	G	G	R	A	A	A	V	N	I	I	P	S	T	T	G	A	A	K	A	V	G	M	V	I	P	S	T	K	G	K
Template Known Secondary structure																				T	T				S												T	T	S	B	S	S	S				S	S		T	G	G	G	S	B	G	G	G								S									S	G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		L	K	G	H	A	Q	R	V	P	V	K	T	G	S	V	T	E	L	V	S	I	L	G	K	K	V	T	A	E	E	V	N	N	A	L	K	Q	A	T	T	N	.	.	N	E	S	F	G	Y	T	D	E	E	I	V	S	S	D	I	I	G	S	H	F	G	S	V	F	D	A	T	Q	T	E	I	T	A	V	G	D
Query Conservation																																											.	.
Alig confidence																																											.	.																																		.	.	.
Template Conservation																																																																														.	.	.
Template Sequence		L	T	G	M	S	F	R	V	P	T	P	D	V	S	V	V	D	L	T	F	R	A	T	R	D	T	S	I	Q	E	I	D	K	A	I	K	K	A	A	Q	T	Y	M	K	G	I	L	G	F	T	D	E	E	L	V	S	A	D	F	I	N	D	N	R	S	S	V	Y	D	S	K	A	T	L	Q	N	.	.	.	N
Template Known Secondary structure										S		S	S											S	S																	T	T	T	T	T	T						S				G	G	G	G	T	T				S										T	T	.	.	.	S
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.
						304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	L	Q	L	V	K	T	V	A	W	Y	D	N	E	Y	G	F	V	T	Q	L	I	R	T	L	E	K	F	A	K
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		L	P	G	E	K	R	F	F	K	V	V	S	W	Y	D	N	E	W	A	Y	S	H	R	V	V	D	L	V	R	Y	M	A	A
Template Known Secondary structure			T	T		S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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