Job Description P33898 Confidence 100.00% Date Thu Jan 5 11:52:40 GMT 2012 Rank 23 Aligned Residues 308 % Identity 18% Template c1cf2Q_ PDB info PDB header:oxidoreductase Chain: Q: PDB Molecule:protein (glyceraldehyde-3-phosphate PDBTitle: three-dimensional structure of d-glyceraldehyde-3-phosphate2 dehydrogenase from the hyperthermophilic archaeon3 methanothermus fervidus Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.																							.
Query SS confidence																																						.																							.
Query Sequence		M	S	K	V	G	I	N	G	F	G	R	I	G	R	L	V	L	G	R	L	L	E	V	K	S	N	I	D	V	V	A	I	N	D	L	T	.	S	P	K	I	L	A	Y	L	L	K	H	D	S	N	Y	G	P	F	P	W	S	V	.	D	F	T	E	D	S	L	I	V	D	G	K	S	I	A	V	Y	A	E	K
Query Conservation																																						.																							.
Alig confidence																							.															.																							.																				.
Template Conservation																							.																																																										.
Template Sequence		M	K	A	V	A	I	N	G	Y	G	T	V	G	K	R	V	A	D	A	I	A	.	Q	Q	D	D	M	K	V	I	G	V	S	K	T	R	P	D	F	E	A	R	M	A	L	K	K	G	Y	D	L	Y	V	A	I	P	E	R	V	K	L	F	E	K	A	G	I	E	V	A	G	T	V	D	D	M	L	D	E	.
Template Known Secondary structure											S	T	T										.		S	T	T									S	S		S									T	T						S	S	G	G	G							T	T													T	.
Template Predicted Secondary structure																							.																																																										.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		E	A	K	N	I	P	W	K	A	K	G	A	E	I	I	V	E	C	T	G	F	Y	T	S	A	E	K	S	Q	A	H	L	D	A	G	A	K	K	V	L	I	S	A	P	A	G	E	M	K	.	.	T	I	V	Y	N	V	N	D	D	T	L	D	G	N	D	T	I	V	S	V	A	S	C	T	T	N	C	L	A
Query Conservation																																																			.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																							.	.															.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																																							.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	A	D	I	V	I	D	C	T	P	E	G	I	G	A	K	N	L	K	M	Y	K	E	K	G	I	K	A	I	F	Q	G	G	E	K	H	E	D	I	G	L	S	F	N	S	L	S	N	Y	E	E	S	Y	G	K	.	D	Y	T	R	V	V	S	C	N	T	T	G	L	C
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.		S								T	T													T							T	T	S						S									G	G	G	G	T	T		.	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																							.
Template SS confidence
													79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	A	K	A	L	H	D	S	F	G	I	E	V	G	T	M	T	T	I	H	A	Y	T	G	T	Q	S	L	V	D	G	P	R	G	K	D	L	R	A	S	R	A	A	A	E	N	I	I	P	H	T	T	G	A	A	K	A	I	G	L	V	I	P	E	L	S	G	K	L	K	G	H	A	Q	R	V	P	V	K
Query Conservation
Alig confidence																															.	.	.	.	.																						.	.	.	.	.
Template Conservation																															.	.	.	.	.																						.	.	.	.	.
Template Sequence		R	T	L	K	P	L	H	D	S	F	G	I	K	K	V	R	A	V	I	V	R	R	G	A	D	P	A	Q	V	.	.	.	.	.	S	K	G	P	I	N	A	I	I	P	N	P	P	K	L	P	S	H	H	G	P	.	.	.	.	.	D	V	K	T	V	L	D	I	N	I	D	T	M	A	V	I	V	P	T	T
Template Known Secondary structure																								S	S		T	T		T	.	.	.	.	.	T				S	S					S	S	S	S	S	S		T				.	.	.	.	.				T	T	S		S										S		S
Template Predicted Secondary structure																															.	.	.	.	.																						.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.						.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.						.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.							.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.
Query Sequence		T	G	S	V	T	E	L	V	S	I	L	G	K	K	V	T	A	E	E	V	N	N	A	L	K	Q	A	T	T	N	.	.	.	.	.	.	N	E	S	F	G	Y	T	D	E	E	I	V	S	S	D	I	I	G	S	H	F	G	S	V	F	D	A	T	Q	T	E	I	T	A	V	G	D	L	Q	L	V	K	T	V
Query Conservation																																.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.																	.
Template Conservation																																																						.
Template Sequence		L	M	H	Q	H	N	V	M	V	E	V	E	E	T	P	T	V	D	D	I	I	D	V	F	E	D	T	P	R	V	I	L	I	S	A	E	D	G	L	T	S	T	A	E	I	M	E	Y	A	K	E	L	.	G	R	S	R	N	D	L	F	E	I	P	V	W	R	E	S	I	T	V	V	D	N	E	I	Y	Y	M
Template Known Secondary structure		S											S	S														S	T	T						G	G	G	T			S												.	T		G	G	G				S					G	G	G					T	T
Template Predicted Secondary structure																																																						.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	Y	D	N	E	Y	G	F	V	T	Q	L	I	R	T	L	E	K	F	A	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	V	H	Q	E	S	D	I	V	P	E	N	V	D	A	V	R	A	I	L	E	M
Template Known Secondary structure						T	T	T	T	T												T	T	S
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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