Return to main results Retrieve Phyre Job Id

Job DescriptionP33898
Confidence100.00%DateThu Jan 5 11:52:40 GMT 2012
Rank16Aligned Residues324
% Identity50%Templatec1cerC_
PDB info PDB header:oxidoreductase (aldehyde(d)-nad(a))Chain: C: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: determinants of enzyme thermostability observed in the2 molecular structure of thermus aquaticus d-glyceraldehyde-3 3-phosphate dehydrogenase at 2.5 angstroms resolution
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  SKVGINGFGRIGRLVLGRLLEVKSNIDVVAINDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLIVDGKSIAVYAEKEAK
Query Conservation 












 


 


    







       



  

  
     
      
 
 
  
 
     
 
Alig confidence 






















..






















































Template Conservation 






 




   


    ..  





       



  

  
     
      
 
 
  
 
    

 
Template Sequence  MKVGINGFGRIGRQVFRILHSRG. . VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK
Template Known Secondary structure 


STT..


SS


TTT
S
SS

SSTT

S
GG
Template Predicted Secondary structure 






..






















Template SS confidence 















































































   1........10.........20... ......30.........40.........50.........60.........70........
 
   82.......90.........100.........110.........120... ......130.........140. ........150.........
Predicted Secondary structure 























.










.





Query SS confidence 









































.

















.

















Query Sequence  NIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPA. GEMKTIVYNVNDDTLDGN. DTIVSVASCTTNCLAPMA
Query Conservation   
 
   






 

 
     
  

 



 





 . 


 

 


       .  








  


 
Alig confidence 









































.

















.

















Template Conservation   
 
   






 

     
 
   
 



 

 


     
 

 


          



 



  


 
Template Sequence  EIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVM
Template Known Secondary structure  GS
T
SSS

BGGGGGGT
SSS

BS
S

TTTSGGG

TTT




TT
Template Predicted Secondary structure 





































Template SS confidence 















































































   81........90.........100.........110.........120.........130.........140.........150.........160
 
   160.........170.........180.........190.........200.........210.........220.........230.........
Predicted Secondary structure 












































Query SS confidence 















































































Query Sequence  KALHDSFGIEVGTMTTIHAYTGTQSLVDGPRGKDLRASRAAAENIIPHTTGAAKAIGLVIPELSGKLKGHAQRVPVKTGS
Query Conservation 
 
   


    





 
  
   
     
 
  

   



  

 

 
  


 
 


 
 





   
Alig confidence 






























.















































Template Conservation 
 
   


    





 
  
   
   . 
 
  
    



  

 



  


 
 


 
 





   
Template Sequence  KVLEEAFGVEKALMTTVHSYTNDQRLLDLPH. KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGS
Template Known Secondary structure  T


TTSBSSS


.SSTTTTSBGGG





GGGTTTS
SS
Template Predicted Secondary structure 














.
























Template SS confidence 















































































   159160.........170.........180......... 190.........200.........210.........220.........230.......
 
   240.........250.........260...... ...270.........280.........290.........300.........310.......
Predicted Secondary structure 






..
























Query SS confidence 


























. .


















































Query Sequence  VTELVSILGKKVTAEEVNNALKQATTN. . NESFGYTDEEIVSSDIIGSHFGSVFDATQTEITAVGDLQLVKTVAWYDNEY
Query Conservation    

 
      
 


   

 
   ..   
       

 
      
 
 
   
 
         
   




 
Alig confidence 


























..
































....













Template Conservation    

 
   
  
 


   

 
    
 
 
       

 
      
 
 
       ....    
   




 
Template Sequence  ISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKAL. . . . GNMVKVFAWYDNEW
Template Known Secondary structure  SS


TTTBTT
S


GGGSTT


SGGG
....TT
TT
Template Predicted Secondary structure 


























....





Template SS confidence 















































































   239240.........250.........260.........270.........280.........290.........300 .........310....
 
   318.320.........330..
Predicted Secondary structure 
Query SS confidence 














Query Sequence  GFVTQLIRTLEKFAK
Query Conservation 


 
  
       
Alig confidence 














Template Conservation 


 
  
       
Template Sequence  GYANRVADLVELVLR
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 














   316...320.........330
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions