Job Description P24211 Confidence 5.70% Date Thu Jan 5 11:41:16 GMT 2012 Rank 59 Aligned Residues 159 % Identity 15% Template c3iyoA_ PDB info PDB header:virus Chain: A: PDB Molecule:capsid protein; PDBTitle: cryo-em model of virion-sized hev virion-sized capsid Resolution 10.50 Å

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		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.			.	.	.	.	.		.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure																														.	.						.
Query SS confidence																														.	.						.
Query Sequence		R	H	Y	D	P	L	Q	G	R	Y	I	T	P	D	P	I	G	L	R	G	G	W	N	M	Y	Q	Y	P	.	.	L	N	P	I	Q	.	V	I	D	P	M	G	L	D	A	I	E	N	M	T	S	G	G	L	I	Y	A	V	S	G	V	P	G	L	I	A	A	N	S	I	T	N	S	A	Y	Q	F	G	Y	D
Query Conservation																														.	.						.
Alig confidence							.	.	.	.																				.	.						.																									.	.										.
Template Conservation							.	.	.	.																																																				.	.										.
Template Sequence		R	Q	Y	N	L	.	.	.	.	S	T	S	P	L	T	S	S	V	A	T	G	T	N	L	V	L	Y	A	A	P	L	S	P	L	L	P	L	Q	D	G	T	N	T	H	I	M	A	T	E	A	S	N	Y	A	Q	Y	R	V	A	R	.	.	A	T	I	R	Y	R	P	L	V	.	P	N	A	V	G	G	Y	A
Template Known Secondary structure							.	.	.	.											S		S										S	S	S				S	S	S	S											T	B		S					S	.	.										.		T	T		B	S
Template Predicted Secondary structure							.	.	.	.																																																				.	.										.
Template SS confidence
		134	.	.	.	.					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.
		571	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.			.	.	.	.
Predicted Secondary structure																															.																																													.	.
Query SS confidence																															.																																													.	.
Query Sequence		M	D	A	I	V	G	G	A	H	N	G	A	A	D	A	M	R	H	C	Y	L	M	C	R	M	T	K	T	F	.	G	S	T	I	A	D	V	I	G	K	N	H	E	A	A	G	D	R	Q	G	Q	P	A	K	E	R	I	M	D	L	K	N	N	T	V	G	I	A	C	G	D	F	S	A	.	.	K	C	S	D
Query Conservation																															.																																													.	.
Alig confidence																															.																																													.	.
Template Conservation
Template Sequence		I	S	I	S	F	W	P	Q	T	T	T	T	P	T	S	V	D	M	N	S	I	T	S	T	D	V	R	I	L	V	Q	P	G	I	A	S	E	L	V	I	P	S	E	R	L	H	Y	R	N	Q	G	W	R	S	V	E	T	S	G	V	A	E	E	E	A	T	S	G	L	V	M	L	C	I	H	G	S	P	V	N
Template Known Secondary structure								S		T	T	T						S						T	S	S	S	B					T	T													T	T	S	S	S	S				S		T	T	T	S																S			B
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		648	.	650	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	I	E	K	Y	N	T	G	Q	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Y	T	N	T	P	Y	T	G	A	L	G
Template Known Secondary structure		S	S	S		S				S
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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