Job Description P76193 Confidence 100.00% Date Thu Jan 5 12:20:20 GMT 2012 Rank 1 Aligned Residues 162 % Identity 38% Template c1y7mB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein bsu14040; PDBTitle: crystal structure of the b. subtilis ykud protein at 2 a2 resolution Resolution 2.05 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	Y	T	V	Q	E	G	D	K	N	L	Q	A	I	A	R	R	F	D	T	A	A	M	L	I	L	E	A	N	N	T	I	A	P	V	P	K	P	G	T	T	I	T	I	P	S	Q	L	L	L	P	D	A	P	R	Q	G	I	I	V	N	L	A	E	L	R	L	Y	Y	Y	P	P	G	E	N	I	V	Q	V
Query Conservation
Alig confidence											.																																						.																											.
Template Conservation											.																																						.																											.
Template Sequence		L	T	Y	Q	V	K	Q	G	D	.	T	L	N	S	I	A	A	D	F	R	I	S	T	A	A	L	L	Q	A	N	P	S	L	Q	A	G	L	T	A	G	Q	S	I	V	I	P	G	.	L	P	D	P	Y	T	I	P	Y	H	I	A	V	S	I	G	A	K	T	L	T	L	S	L	N	N	.	R	V	X	K	T
Template Known Secondary structure								T	T		.									T	T			B	T	T	B	T	T	T	S		T	T		S	S			T	T						T	T	.				G	G	G	S								T	T	T	T							T	T	.
Template Predicted Secondary structure											.																																						.																											.
Template SS confidence
		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	I	G	I	G	L	Q	G	L	E	T	P	V	M	E	T	R	V	G	Q	K	I	P	N	P	T	W	T	P	T	A	G	I	R	Q	R	S	L	E	R	G	I	K	L	P	P	V	V	P	A	G	P	N	N	P	L	G	R	Y	A	L	R	L	A	H	G	N	G	E	Y	L	I	H	G	T	S	A	P	D
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Sequence		Y	P	I	A	V	G	K	I	L	T	Q	T	P	T	G	E	F	Y	I	I	N	R	Q	R	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	P	F	G	A	Y	W	L	S	L	S	A	A	H	.	.	Y	G	I	H	G	T	N	N	P	A
Template Known Secondary structure					B			B	T	T	B																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	T	T						S	S	T	T	.	.							S		G	G
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.																												.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	G	L	R	V	S	S	G	C	I	R	M	N	A	P	D	I	K	A	L	F	S	S	V	R	T	G	T	P	V	K	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	G	K	A	V	S	K	G	C	I	R	X	H	N	K	D	V	I	E	L	A	S	I	V	P	N	G	T	R	V	T	I	N
Template Known Secondary structure		G	T	T	S				S	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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