Job Description P77570 Confidence 98.17% Date Thu Jan 5 12:30:41 GMT 2012 Rank 4 Aligned Residues 247 % Identity 17% Template c2ivoC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein Resolution 2.9 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	L	D	T	Q	L	G	Q	L	F	A	D	A	V	N	A	L	L	K	E	Q	N	L	Q	A	R	D	I	V	A	I	G	C	H	G	Q	T	V	W	H	E	P	T	G	V	A	P	H	T	L	Q	I	G	D	N	N	Q	I	V	A	R	T	G	I	T	V	V	G	D	F	R	R	R	D	I	A	L	G	G
Query Conservation
Alig confidence																																				.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Sequence		K	E	A	A	E	H	H	A	R	L	M	K	P	L	L	R	K	A	L	S	E	A	G	V	S	L	D	D	I	D	V	I	A	F	.	.	.	.	.	S	Q	G	P	G	L	G	P	A	L	R	V	V	A	T	A	A	R	A	L	A	V	K	Y	R	K	P	I	V	G	V	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																								T			T	T	T							.	.	.	.	.				S	S																			T	T							.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.
Predicted Secondary structure																																									.					.	.																												.	.	.
Query SS confidence																																									.					.	.																												.	.	.
Query Sequence		Q	G	A	P	L	V	P	A	F	H	H	A	L	L	A	H	P	T	E	R	R	M	V	L	N	I	G	G	I	A	N	L	S	L	L	I	P	G	Q	.	P	V	G	G	.	.	Y	D	T	G	P	G	N	M	L	M	D	A	W	I	W	R	Q	A	G	K	P	Y	D	K	D	A	E	.	.	.	W	A	R	A
Query Conservation																																									.					.	.																												.	.	.
Alig confidence		.	.																																						.					.	.								.					.															.	.	.
Template Conservation		.	.																																																				.					.
Template Sequence		.	.	N	H	C	I	A	H	V	E	I	T	K	M	F	G	V	K	D	P	V	G	L	Y	V	S	G	G	N	T	Q	V	L	A	L	E	G	G	R	Y	R	V	F	G	E	T	L	D	I	G	I	G	N	.	A	I	D	V	.	F	A	R	E	L	G	L	G	F	P	G	G	P	K	V	E	K	L	A	E	K
Template Known Secondary structure		.	.									G	G	G	G	G	T			S								S	S									T	T								B	S	S	S					.					.					T	T			S	S											T
Template Predicted Secondary structure		.	.																																																				.					.
Template SS confidence
				106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.				.	.	.	.	.	290	.
Predicted Secondary structure																																	.	.																																						.	.	.
Query SS confidence																																	.	.																																						.	.	.
Query Sequence		G	K	V	I	L	P	L	L	Q	N	M	L	S	D	P	Y	F	S	Q	P	A	P	K	S	T	G	R	E	Y	F	N	.	.	Y	G	W	L	E	R	H	L	R	H	F	P	G	V	D	P	R	D	V	Q	A	T	L	A	E	L	T	A	V	T	I	S	E	Q	V	L	L	.	.	.	S	G	G	C	E	R	L
Query Conservation																																	.	.																																						.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.																			.	.												.																										.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.																																.
Template Sequence		G	.	.	.	.	.	.	.	.	.	.	.	.	E	K	Y	I	E	L	P	Y	A	V	K	G	M	D	L	S	F	S	G	L	L	T	E	A	I	R	K	Y	R	S	G	.	K	Y	R	V	E	D	L	A	Y	S	F	Q	E	T	A	F	A	A	L	V	E	V	T	E	R	A	V	A	H	T	E	K	D	E	V
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.		S										T	T																	T		.		S																															S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.																																.
Template SS confidence
		182													.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		M	V	C	G	G	G	S	R	N	P	L	L	M	A	R	L	A	A	L	L	P	.	.	G	T	E	V	T	T	T	D	A	V	G	I	S	G	D	D	M	E	A	L	A	F	A	W	L	A	W	R	T	L	A	G
Query Conservation																							.	.
Alig confidence																							.	.									.							.	.
Template Conservation																																	.							.	.
Template Sequence		V	L	V	G	G	V	A	A	N	N	R	L	R	E	M	L	R	I	M	T	E	D	R	G	I	K	F	F	V	P	P	.	Y	D	L	C	R	D	.	.	N	G	A	M	I	A	Y	T	G	L	R	M	Y	K	A
Template Known Secondary structure					S	G	G	G	G																T								.	G	G	G	T	S	S	.	.		S													T
Template Predicted Secondary structure																																	.							.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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