Phyre 2 alignment of P77570 with c2gupA

Job Description P77570
Confidence 82.81% Date Thu Jan 5 12:30:41 GMT 2012

Rank 55 Aligned Residues 255

% Identity 15% Template c2gupA_

PDB info PDB header:transferase Chain: A: PDB Molecule:rok family protein; PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose

Resolution 2.01 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	D	V	V	L	A	T	I	D	E	H	R	V	A	Q	L	A	S	L	S	W	P	I	P	V	S	L	K	Q	A	V	L	D	I	C	Q	G	Q	Q	L	T	L	S	Q	F	G	Q	L	D	T	Q	L	G	Q	L	F	A	D	A	V	N	A	L	L	K	E	Q	N	L	Q	A	R	D	I	V	A	I	G	C	H
Query Conservation
Alig confidence											.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation											.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Sequence	I	K	F	A	S	L	T	P	D	G	.	.	.	K	I	L	D	K	T	S	I	S	T	P	E	N	L	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	A	W	L	D	Q	R	L	S	E	Q	D	Y	S	G	.	.	.	I	A	X	S	V	P
Template Known Secondary structure								T	T		.	.	.												S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	S			S		.	.	.						S
Template Predicted Secondary structure											.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
	13	.	.	.	.	.	.	20	.	.				.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.																											.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.				.	.	.	.	.	60

	98							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence	G	.	.	.	.	.	.	Q	T	V	W	H	E	P	T	G	V	A	P	H	T	L	Q	I	G	D	N	N	Q	I	V	A	R	T	G	I	T	V	V	G	D	F	R	R	R	D	I	A	L	G	G	Q	G	A	P	L	V	P	A	F	H	H	A	L	L	A	H	P	T	E	R	R	M	V	L	N	I	G	G	I
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.								.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence	G	A	V	N	Q	E	T	G	V	I	D	G	F	S	.	.	.	A	V	P	Y	I	H	G	F	S	W	Y	E	A	L	S	S	Y	Q	L	P	V	H	L	E	N	D	A	N	C	V	G	L	S	.	.	.	.	.	.	.	.	.	.	.	E	L	L	A	H	P	E	L	E	N	A	A	C	V	V	I	G	T	G
Template Known Secondary structure	S				T	T	T		B			S			.	.	.	S	S	G	G	G	S	S	S	B					T	G	G	G																	.	.	.	.	.	.	.	.	.	.	.						T	T		S	S							S	S	S
Template Predicted Secondary structure															.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	61	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.												.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.

	172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	N	L	S	L	L	I	P	G	Q	P	V	G	G	Y	D	T	G	P	G	N	M	L	M	D	A	W	I	W	R	Q	A	G	K	P	Y	D	K	D	A	E	W	A	R	A	G	K	V	I	L	P	L	L	Q	N	M	L	S	D	P	Y	F	S	Q	P	A	P	K	S	T	G	R	E	Y	F	N	Y	G	W	L
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Sequence	I	G	G	A	X	I	I	N	G	R	L	H	R	G	R	H	G	L	G	G	.	.	.	.	.	.	.	.	.	E	F	G	Y	X	T	T	L	A	P	A	E	.	.	.	.	.	.	.	K	L	N	N	W	S	Q	L	A	S	T	G	N	X	V	R	Y	V	I	E	K	S	G	H	T	D	W	D	G	R	K	I
Template Known Secondary structure								T	T						T	T	S		T	T	.	.	.	.	.	.	.	.	.		G	G	G		B	S	S			S	S	.	.	.	.	.	.	.	S			B						S													S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template SS confidence
	127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.										.	.	.	150	.	.	.	.	.	.	.	.								.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

	252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.											.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.
Query Sequence	E	R	H	L	R	H	F	P	G	V	D	P	R	D	V	Q	A	T	L	A	E	L	T	A	V	T	I	S	E	Q	V	L	L	S	G	G	C	E	R	L	M	V	C	G	G	G	S	R	N	P	L	L	M	A	R	L	A	A	L	L	.	.	.	.	.	.	.	.	.	.	P	G	T	E	V	T	T	T	D	A
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.
Alig confidence							.																						.																																.	.	.	.	.	.	.	.	.	.
Template Conservation							.																						.
Template Sequence	Y	Q	E	A	A	A	.	G	N	I	L	C	Q	E	A	I	E	R	X	N	R	N	L	A	Q	G	L	L	.	N	I	Q	Y	L	I	D	P	G	V	I	S	L	G	G	S	I	S	Q	N	P	D	F	I	Q	G	V	K	K	A	V	E	D	F	V	D	A	Y	E	E	Y	T	V	A	P	V	I	Q	A	C	T
Template Known Secondary structure						T	.	T																					.									S						S	G	G	G	G																				T	T			S								S
Template Predicted Secondary structure							.																						.
Template SS confidence
	191	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	G	I	S	G	D	D	M	E	A	L	A	F	A	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Y	H	A	D	A	N	L	Y	G	A	L	V	N	W	L
Template Known Secondary structure		S	T	T
Template Predicted Secondary structure
Template SS confidence
	269	270	.	.	.	.	.	.	.	.	.	280	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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