Job Description P77570 Confidence 86.20% Date Thu Jan 5 12:30:41 GMT 2012 Rank 53 Aligned Residues 279 % Identity 15% Template c1z05A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. Resolution 2.00 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	V	V	L	A	T	I	D	E	H	R	V	A	Q	L	A	S	L	S	W	P	I	P	V	S	L	K	Q	A	V	L	D	I	C	Q	G	Q	Q	L	T	L	S	Q	F	G	Q	L	D	T	Q	L	G	Q	L	F	A	D	A	V	N	A	L	L	K	E	Q	N	L	Q	A	R	D	I	V	A	I	G	C	H
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	I	A	L	H	E	L	G	G	E	V	L	I	D	T	K	I	D	I	H	E	I	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	V	L	A	R	L	L	F	E	I	E	E	F	F	Q	T	Y	A	A	Q	L	D	R	V	T	S	I	A	I	T
Template Known Secondary structure									T	T	S														B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	T	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120																									.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.						.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																						.	.	.	.	.
Query SS confidence																						.	.	.	.	.
Query Sequence		G	Q	T	V	W	H	E	P	T	G	V	A	P	H	T	L	Q	I	G	D	.	.	.	.	.	N	N	Q	I	V	A	R	T	G	I	T	V	V	G	D	F	R	R	R	D	I	A	L	G	G	Q	G	A	P	L	V	P	A	F	H	H	A	L	L	A	H	P	T	E	R	R	M	V	L	N	I	G	G	I	A
Query Conservation																						.	.	.	.	.
Alig confidence																						.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.
Template Sequence		L	P	G	L	V	N	S	E	Q	G	I	V	L	Q	M	P	H	Y	N	V	K	N	L	A	L	G	P	E	I	Y	K	A	T	G	L	P	V	F	V	A	N	D	T	R	A	W	A	L	A	.	.	.	.	.	.	.	.	.	E	K	L	F	G	H	S	Q	D	V	D	N	S	V	L	I	S	I	H	H	G	L
Template Known Secondary structure			S	S				T	T	T	T						S	S	S	B		S	S	B												S															.	.	.	.	.	.	.	.	.					S	T	T	T	T		S	S							S	S	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200										.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.								220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.
Query Sequence		N	L	S	L	L	I	P	G	Q	P	V	G	G	Y	D	T	G	P	G	N	M	L	M	D	A	W	I	W	R	Q	A	G	K	P	Y	D	K	D	A	E	W	A	R	A	G	K	V	.	.	.	.	.	.	.	I	L	P	L	L	Q	N	M	L	S	D	P	Y	F	S	Q	P	A	P	K	S	T	G	R	E	Y
Query Conservation																																																	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.
Template Sequence		G	A	G	I	V	L	D	G	R	V	L	Q	G	R	H	G	N	I	G	E	.	.	.	.	.	.	.	.	.	L	G	H	I	Q	I	D	P	Q	G	K	R	C	H	C	G	N	Y	G	C	L	E	T	V	A	S	S	Q	A	I	R	D	Q	V	T	A	R	I	Q	A	G	E	P	S	C	L	A	T	V	E	E
Template Known Secondary structure								T	T					T	T	T	T		T	T	B	.	.	.	.	.	.	.	.	.		T	T	S	B			T	T			B		T	T	S		B	S	B	T					S														T	T				T	T	T	T		S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.										.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.										.	.	.	.
Predicted Secondary structure																																																								.													.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.													.	.	.	.	.	.	.	.	.
Query Sequence		F	N	Y	G	W	L	E	R	H	L	R	H	F	P	G	V	D	P	R	D	V	Q	A	T	L	A	E	L	T	A	V	T	I	S	E	Q	V	L	L	S	G	G	C	E	R	L	M	V	C	G	G	G	S	R	.	N	P	L	L	M	A	R	L	A	A	L	L	.	.	.	.	.	.	.	.	.	P	G	T	E
Query Conservation																																																								.													.	.	.	.	.	.	.	.	.
Alig confidence														.																												.														.													.	.	.	.	.	.	.	.	.
Template Conservation														.																												.
Template Sequence		I	S	I	E	D	I	C	A	A	A	A	D	.	G	D	P	L	A	V	D	V	I	Q	Q	L	G	R	Y	L	G	A	A	I	A	I	V	I	N	L	F	.	N	P	E	K	I	L	I	G	G	V	I	N	Q	A	K	S	I	L	Y	P	S	I	E	Q	C	I	R	E	Q	S	L	P	V	Y	H	Q	D	L	K
Template Known Secondary structure													T	.	T																											.			S						S	G	G	G	G	G																S						T	T
Template Predicted Secondary structure														.																												.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	T	T	D	A	V	G	I	S	G	D	D	M	E	A	L	A	F	A	W	L	A	W	R	T	L	A	G
Query Conservation
Alig confidence							.											.	.	.
Template Conservation							.											.	.	.
Template Sequence		L	V	E	S	R	.	F	Y	K	Q	A	T	M	P	G	A	.	.	.	A	L	I	K	Q	A	L	Y	D	G
Template Known Secondary structure						S	.		S	S		T	T					.	.	.									T	S
Template Predicted Secondary structure							.											.	.	.
Template SS confidence
		372	.	.	.	.		.	.	.	380	.	.	.	.	.	.				.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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