 |
Job Description | Q46803 | Confidence | 87.29% | Date | Thu Jan 5 12:34:30 GMT 2012 |
Rank | 189 | Aligned Residues | 60 |
% Identity | 22% | Template | c3ckyA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:2-hydroxymethyl glutarate dehydrogenase; |
PDBTitle: structural and kinetic properties of a beta-hydroxyacid dehydrogenase2 involved in nicotinate fermentation
|
Resolution | 2.30 Å |
|
 |
  |   |
189 | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | K | I | A | M | T | W | A | Y | S | P | S | Y | G | K | P | L | S | V | P | Q | G | I | I | G | L | M | T | R | F | G | M | D | V | T | L | A | H | P | E | G | Y | D | L | I | P | D | V | V | E | V | A | K | N | N | A | K | A | S | G | G | S | F | R | Q | V | T | S | M | E | E | A | F | K | D | A | D | I | V |
Query Conservation |   |
  |
|
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |
|
|   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |
|   |   |
|
|
|   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
|
|   |
| . | . | . | . | . | . | . | . |   |
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   | . | . | . | . | . |   |
|   |   |   |   |   |   |   |   |
|   |   | . | . | . | . | . | . |   |
|   |   |   |   |   |
|   |   |
|   |   |   |   |
|
|   |
|
Template Sequence |   |
I | K | I | G | F | I | G | L | G | . |
. |
. |
. |
. |
. |
. |
. |
A | M | G | K | P | M | A | I | N | L | L | K | E | G | V | T | V | Y | A | . |
. |
. |
. |
. |
F | D | L | M | E | A | N | V | A | A | V | V | A | . |
. |
. |
. |
. |
. |
Q | G | A | Q | A | C | E | N | N | Q | K | V | A | A | A | S | D | I | I |
Template Known Secondary structure |   |
|  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | T | T |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  | . | . | . | . | . |  |
| S | S |  |  |  |  |  |  |  |  | T | . | . | . | . | . | . | T | T |
|  |  |
| S | S |  |  |  |  |  |  |  |
| S |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . | . | . | . |  |  |
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |
|
|
|  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
5 | . | . | . | . | 10 | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 40 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|