Job Description Q46803 Confidence 56.59% Date Thu Jan 5 12:34:30 GMT 2012 Rank 307 Aligned Residues 176 % Identity 16% Template c2hk8B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from aquifex2 aeolicus at 2.35 angstrom resolution Resolution 2.35 Å

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		63	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.																																													.
Query SS confidence												.	.																																													.
Query Sequence		G	I	S	V	F	R	D	N	S	T	.	.	R	T	R	F	S	Y	A	S	A	L	N	L	L	G	L	A	Q	Q	D	L	D	E	G	K	S	Q	I	A	H	G	E	T	V	R	E	T	A	N	M	I	S	F	C	A	.	D	A	I	G	I	R	D	D	M	Y	L	G	A	G	N	A	Y	M	R	E	V	G	A
Query Conservation												.	.																																													.
Alig confidence												.	.																											.	.	.	.															.											.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.																										.	.	.	.	.	.	.	.
Template Sequence		L	Y	G	V	I	G	F	P	V	K	H	S	L	S	P	V	F	Q	N	A	L	I	R	Y	A	G	L	N	A	V	Y	L	A	F	E	I	N	P	.	.	.	.	E	E	L	K	K	A	F	E	G	F	K	A	L	K	V	K	G	I	N	V	T	V	P	F	K	.	.	.	.	.	.	.	.	E	E	I	I	P
Template Known Secondary structure								S	S		T	T		S													T		S										G	.	.	.	.	G	G											T	T								T	T		T	.	.	.	.	.	.	.	.	T	T	T	G	G
Template Predicted Secondary structure																																								.	.	.	.																										.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70									.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		A	L	D	D	G	Y	K	Q	G	V	L	.	.	P	Q	R	P	A	L	V	N	L	Q	C	D	I	D	H	P	T	Q	S	M	A	D	L	A	W	L	R	E	H	F	G	S	L	E	N	L	K	G	K	K	I	A	M	T	W	A	Y	S	P	S	Y	G	K	P	L	S	V	P	Q	G	I	I	G	L	M	T	R
Query Conservation													.	.
Alig confidence													.	.																																.	.	.														.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.														.	.	.	.	.	.	.	.
Template Sequence		L	L	D	Y	V	E	D	T	A	K	E	I	G	A	V	N	T	V	K	F	E	N	G	K	A	Y	G	Y	N	T	D	W	I	G	F	L	K	S	L	K	S	L	I	P	.	.	.	E	V	K	E	K	S	I	L	V	L	G	A	G	.	.	.	.	.	.	.	.	G	A	S	R	A	V	I	Y	A	L	V	K
Template Known Secondary structure		G		S										T									T	T																	T	T	T		S	.	.	.			T	T									S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.														.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.									.	.	.	.	.	.	.	140	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	M	D	V	T	L	A	H	P	E	G	Y	D	L	I	P	D	V	V	E	V	A	K	N	N	A	K	A	S	G	G	S	F	R	Q	V	T	S	M	E	E	A	F	K	D	A	D	I	V	Y	P	K	S
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.													.	.
Template Conservation													.	.	.	.	.	.	.	.													.	.
Template Sequence		E	G	A	K	V	F	L	W	N	R	T	.	.	.	.	.	.	.	.	K	E	K	A	I	K	L	A	Q	K	F	P	.	.	L	E	V	V	N	S	P	E	E	V	I	D	K	V	Q	V	I	V	N	T	T
Template Known Secondary structure		T	T								S	S	.	.	.	.	.	.	.	.											S		.	.					S		G	G	G	T	G	G	G		S						S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.													.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.									.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions