Job Description Q46803 Confidence 45.51% Date Thu Jan 5 12:34:30 GMT 2012 Rank 340 Aligned Residues 195 % Identity 11% Template c2bmaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase (nadp+); PDBTitle: the crystal structure of plasmodium falciparum glutamate2 dehydrogenase, a putative target for novel antimalarial3 drugs Resolution 2.7 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.								.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.
Query Sequence		E	Q	T	P	D	E	L	K	Q	V	L	D	V	A	A	A	L	K	A	L	R	A	E	N	I	S	T	K	V	F	N	S	G	L	G	I	S	V	F	R	D	N	S	T	R	T	R	F	.	.	.	.	.	.	.	S	Y	A	S	A	L	N	L	L	G	L	A	Q	Q	D	L	D	E	G	K	S	Q	I	A	H
Query Conservation																																																		.	.	.	.	.	.	.
Alig confidence											.														.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation											.														.	.	.	.	.
Template Sequence		S	V	N	L	S	I	V	K	F	.	L	G	F	E	Q	I	F	K	N	S	L	T	G	.	.	.	.	.	L	S	M	G	G	G	K	G	G	S	D	F	D	P	K	G	K	S	D	N	E	I	L	K	F	C	Q	A	F	M	N	E	L	Y	R	H	I	G	P	C	T	D	V	P	A	G	D	I	G	V	G	G
Template Known Secondary structure		T									.												T		.	.	.	.	.	S	S									S				T	T																		G	G	G		B	T	T	T							S	S
Template Predicted Secondary structure											.														.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		102	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		G	E	T	.	.	V	R	E	T	A	N	M	I	S	F	C	A	D	A	I	G	I	R	D	D	M	Y	L	G	A	G	N	A	Y	M	R	E	V	G	A	A	L	D	D	G	Y	K	Q	G	V	L	P	Q	R	P	A	L	V	N	L	Q	C	D	I	D	H	P	T	Q	S	M	A	D	L	A	W	L	R	E	H
Query Conservation					.	.
Alig confidence					.	.																	.	.		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																							.	.		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		R	E	I	G	Y	L	Y	G	Q	Y	K	K	I	V	N	S	F	N	G	T	L	.	.	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	N	V	K	W	G	G	S	.	N	L	R	V	E	A	T	G	Y	G	L	V	Y	F	V	L	E	V
Template Known Secondary structure																			S		S	S	.	.	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S			G	G	G	T			.	T	T	T	T	T
Template Predicted Secondary structure																							.	.		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.																													.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.									.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure							.																																											.	.	.	.	.	.	.	.																							.	.
Query SS confidence							.																																											.	.	.	.	.	.	.	.																							.	.
Query Sequence		F	G	S	L	E	.	N	L	K	G	K	K	I	A	M	T	W	A	Y	S	P	S	Y	G	K	P	L	S	V	P	Q	G	I	I	G	L	M	T	R	F	G	M	D	V	T	L	A	H	.	.	.	.	.	.	.	.	P	E	G	Y	D	L	I	P	D	V	V	E	V	A	K	N	N	A	K	A	S	G	.	.
Query Conservation							.																																											.	.	.	.	.	.	.	.																							.	.
Alig confidence							.														.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.							.																.	.
Template Conservation																					.	.	.	.	.	.	.	.																																				.
Template Sequence		L	K	S	L	N	I	P	V	E	K	Q	T	A	V	V	S	G	S	G	.	.	.	.	.	.	.	.	N	V	A	L	Y	C	V	Q	K	L	L	H	L	N	V	K	V	L	T	L	S	D	S	N	G	Y	V	Y	E	P	N	G	F	T	H	.	E	N	L	E	F	L	I	D	L	K	E	E	K	K	G	R	I
Template Known Secondary structure				T	T	T			G	G	G								S	S	.	.	.	.	.	.	.	.													T	T									T	T						S	S					.											T	T	T	T			G
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.																																				.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.									240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
									249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	G	S	F	R	Q	V	T	S	M	E	E	A	F	K	D	A	D	I	V	Y	P
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	Y	L	N	H	S	S	T	A	K	Y	F	P	N	E	K	P	W	G	V	P	C	T	L	A	F	P
Template Known Secondary structure		G	G	G	G	G	T		S	S					S	S			T	T	S	S			S
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions