Job Description Q46803 Confidence 56.40% Date Thu Jan 5 12:34:30 GMT 2012 Rank 308 Aligned Residues 250 % Identity 19% Template c1v9lA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase; PDBTitle: l-glutamate dehydrogenase from pyrobaculum islandicum2 complexed with nad Resolution 2.80 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.								.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.
Query Sequence		E	Q	T	P	D	E	L	K	Q	V	L	D	V	A	A	A	L	K	A	L	R	A	E	N	I	S	T	K	V	F	N	S	G	L	G	I	S	V	F	R	D	N	S	T	R	T	R	F	.	.	.	.	.	.	.	S	Y	A	S	A	L	N	L	L	G	L	A	Q	Q	D	L	D	E	G	K	S	Q	I	A	H
Query Conservation																																																		.	.	.	.	.	.	.
Alig confidence												.													.	.	.	.	.																					.	.	.	.	.	.	.																									.
Template Conservation												.													.	.	.	.	.																																																				.
Template Sequence		E	V	T	L	A	D	D	V	A	L	.	A	I	L	M	T	L	K	N	S	L	A	G	.	.	.	.	.	L	P	Y	G	G	A	K	G	A	V	R	V	D	P	K	K	L	S	Q	R	E	L	E	E	L	S	R	G	Y	A	R	A	I	A	P	L	I	G	D	V	V	D	I	P	A	P	D	V	G	T	N	.
Template Known Secondary structure		T										.											T	T	.	.	.	.	.		S										S		G	G	G	S																	G	G	G		B	T	T	T							T	T			.
Template Predicted Secondary structure												.													.	.	.	.	.																																																				.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	T	V	R	E	T	A	N	M	I	S	F	C	A	D	A	I	G	I	R	D	D	M	Y	L	G	A	G	N	A	Y	M	R	E	V	G	A	A	L	D	D	G	Y	K	Q	G	V	L	P	Q	R	P	A	L	V	N	L	Q	C	D	I	D	H	P	T	Q	S	M	A	D	L	A	W	L	R	E	H	F	G
Query Conservation
Alig confidence		.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation		.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		.	.	.	A	Q	I	M	A	W	M	V	D	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	I	K	G	Y	N	V	P	G	V	F	T	S	K	P	P	E	L	W	G	N	P	V	R	E	Y	A	T	.	G	F	G	V	A	V	A	T	R	E	M	A	K
Template Known Secondary structure		.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	S			G	G	G	S		S			S	S	S	S			G	G	G	G	G			.
Template Predicted Secondary structure		.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
					150	.	.	.	.	.	.	.	.	.	160																								.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.
		182	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.									.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure					.																																										.	.	.	.	.	.	.	.
Query SS confidence					.																																										.	.	.	.	.	.	.	.
Query Sequence		S	L	E	.	N	L	K	G	K	K	I	A	M	T	W	A	Y	S	P	S	Y	G	K	P	L	S	V	P	Q	G	I	I	G	L	M	T	R	F	G	M	D	V	T	L	A	.	.	.	.	.	.	.	.	H	P	E	G	Y	D	L	I	P	D	V	V	E	V	A	K	N	N	A	K	A	S	G	G	S	F	R
Query Conservation					.																																										.	.	.	.	.	.	.	.
Alig confidence					.														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Sequence		K	L	W	G	G	I	E	G	K	T	V	A	I	Q	G	M	G	.	.	.	.	.	.	.	.	N	V	G	R	W	T	A	Y	W	L	E	K	M	G	A	K	V	I	A	V	S	D	I	N	G	V	A	Y	R	K	E	G	L	N	V	.	.	.	.	.	.	.	.	E	L	I	Q	K	N	K	G	L	T	G	P
Template Known Secondary structure					S			T	T									S	.	.	.	.	.	.	.	.												T	T	T									S	S						T	T				T	.	.	.	.	.	.	.	.						T	T	T	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.									220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.									.	.	.	.	.	260	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	T	S	M	E	E	A	F	K	D	A	D	I	V	Y	P	K	S	W	A	P	Y	K	V	M	E	E	R	T	E	L	L	R	A	N	D	H	E	G	L	K	A	L	E	K	Q	C	L	A	Q	N	A	Q	H	K	D	W	H	C	T	E	E	M	M	E	L	T	R	D	G	E	A	L	Y	M	H	C	L	P
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.						.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.						.	.
Template Sequence		A	L	V	E	L	F	T	T	K	D	N	A	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	N	P	D	A	I	F	K	L	D	V	D	.	.	.	I	F	V	P	A	.	.
Template Known Secondary structure										T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	T	T	G	G	G	G				S	.	.	.						.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.						.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280																																												.	.	.	.	.	.	.	.	.	290	.	.	.				.	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	I	S	G	V	S	C	K	E	G	E	V	T	E	G	V	F	E	K	Y	R	I	A	T	Y	K	E	A	S	W	K	P	Y	I	I	A	A	M	I	L	S	R	K	Y	A	K	P	G	A	L
Query Conservation
Alig confidence			.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.
Template Sequence		A	.	.	.	.	.	.	.	I	E	N	V	I	R	G	D	N	A	G	L	V	K	A	R	L	V	V	E	G	A	N	G	P	T	T	P	E	A	E	R	I	L	Y	E	R	G	V	V	V	V	P
Template Known Secondary structure		S	.	.	.	.	.	.	.		S	S		B		T	T	T	T	T	T				S						S	S	S		B										T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.
Template SS confidence
		299								300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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