Job Description Q46803 Confidence 100.00% Date Thu Jan 5 12:34:30 GMT 2012 Rank 15 Aligned Residues 305 % Identity 26% Template c1js1Z_ PDB info PDB header:transferase Chain: Z: PDB Molecule:transcarbamylase; PDBTitle: crystal structure of a new transcarbamylase from the2 anaerobic bacterium bacteroides fragilis at 2.0 a3 resolution Resolution 2.00 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		K	D	F	L	L	T	W	E	Q	T	P	D	E	L	K	Q	V	L	D	V	A	A	A	L	K	A	L	R	A	E	N	I	S	T	K	V	F	N	S	G	L	G	I	S	V	F	R	D	N	S	T	R	T	R	F	S	Y	A	S	A	L	N	L	L	G	L	A	Q	Q	D	L	D	E	G	K	S	Q	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence												.	.															.	.																																																		.	.	.
Template Conservation												.	.															.	.
Template Sequence		K	K	F	T	C	V	Q	D	I	G	.	.	D	L	K	S	A	L	A	E	S	F	E	I	K	K	.	.	D	R	F	K	Y	V	E	L	G	R	N	K	T	L	L	M	I	F	F	N	S	S	L	R	T	R	L	S	T	Q	K	A	A	L	N	L	G	M	N	V	I	V	L	D	I	N	Q	G	A	W	K	L
Template Known Secondary structure				B	S	S	G	G	G	G		.	.															.	.	S	T	T	T	T	T	T	T	T	T	T								S	S			S													T	T										T	T	S
Template Predicted Secondary structure												.	.															.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
											99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	I	A	H	G	E	T	V	R	E	T	A	N	M	I	S	F	C	A	D	A	I	G	I	R	D	D	M	Y	L	G	A	G	N	A	Y	M	R	E	V	G	A	A	L	D	D	G	Y	K	Q	G	V	L	P	Q	R	P	A	L	V	N	L	Q	C	D	I	D	H	P	T	Q	S
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																			.	.	.	.	.																					.
Template Conservation																																													.	.	.	.	.																					.
Template Sequence		E	T	E	R	G	V	I	M	D	G	D	K	P	E	H	L	L	E	A	I	P	V	M	G	C	Y	C	D	I	I	G	V	R	S	F	A	R	F	E	N	R	E	Y	.	.	.	.	.	D	Y	N	E	V	I	I	N	Q	F	I	Q	H	S	G	R	P	V	F	S	.	M	E	A	A	T	R	H	P	L	Q	S
Template Known Secondary structure				S	S	S					S	S														T	T		S										S	S					.	.	.	.	.			T	T										S	S	S					.	S	S		S	S
Template Predicted Secondary structure																																													.	.	.	.	.																					.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120						.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	D	L	A	W	L	R	E	H	F	G	S	L	E	N	L	K	G	K	K	I	A	M	T	W	A	Y	S	P	S	Y	G	K	P	L	S	V	P	Q	G	I	I	G	L	M	T	R	F	G	M	D	V	T	L	A	H	P	E	G	Y	D	L	I	P	D	V	V	E	V	A	K	N	N	A	K	A	S	G	G
Query Conservation
Alig confidence																		.	.	.	.														.																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.														.																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	D	L	I	T	I	E	E	Y	K	K	T	A	R	P	.	.	.	.	K	V	V	M	T	W	A	P	H	P	R	P	L	.	P	Q	A	V	P	N	S	F	A	E	W	M	N	A	T	D	Y	E	F	V	I	T	H	P	E	G	Y	E	L	D	P	K	F	V	.	.	.	.	.	.	.	.	.	.	.	G
Template Known Secondary structure													S	S	S	S		.	.	.	.										S	S			.		S												T	S	S	S								T	T									.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																		.	.	.	.														.																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.												.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	R	Q	V	T	S	M	E	E	A	F	K	D	A	D	I	V	Y	P	K	S	W	A	P	Y	K	V	M	E	E	R	T	E	L	L	R	A	N	D	H	E	G	L	K	A	L	E	K	Q	C	L	A	Q	N	A	Q	H	K	D	W	H	C	T	E	E	M	M	E	L	T	R	D	G	E	A	L	Y	M	H
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.				.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.				.
Template Sequence		N	A	R	V	E	Y	D	Q	M	K	A	F	E	G	A	D	F	I	Y	A	K	N	W	A	A	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	N	Y	G	Q	I	L	S	T	D	R	N	W	T	V	G	D	R	Q	M	A	.	V	T	N	.	N	A	Y	F	M	H
Template Known Secondary structure		T					S							T	T		S											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	T	T							T	T	S	S	B						T	.	T	S	S	.	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.				.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.																					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.		.	.	270	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	P	A	D	I	S	G	V	S	C	K	E	G	E	V	T	E	G	V	F	E	K	Y	R	I	A	T	Y	K	E	A	S	W	K	P	Y	I	I	A	A	M	I	L	S	R	K	Y	A	K	P
Query Conservation
Alig confidence							.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.
Template Sequence		C	L	P	V	R	.	.	.	.	.	.	R	N	M	I	V	T	D	D	V	I	E	S	P	Q	S	I	V	I	P	E	A	A	N	R	E	I	S	A	T	V	V	L	K	R	L	L	E	N	L	P
Template Known Secondary structure			S				.	.	.	.	.	.	B	T	T	T	B						T	S	T	T	B																							T
Template Predicted Secondary structure							.	.	.	.	.	.
Template SS confidence
		274	.	.	.	.							.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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