Job Description P39381 Confidence 2.52% Date Thu Jan 5 12:00:13 GMT 2012 Rank 16 Aligned Residues 210 % Identity 10% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.											.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		M	P	S	S	T	H	P	V	E	R	F	S	F	S	T	A	L	F	G	M	L	V	L	T	L	G	M	G	L	G	R	F	L	Y	T	P	M	L	P	V	M	M	A	E	G	S	F	S	F	S	Q	L	S	W	.	.	.	.	.	.	.	.	.	.	I	A	S	G	N	Y	A	G	Y	L	A	G	S	L	L	F
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T
Template Known Secondary structure		B				T	T																																								S		S											T																				T	T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		71	.	.	.	.	.	.												.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.
Query Sequence		S	F	G	A	F	H	Q	.	.	.	.	.	.	.	.	.	.	.	P	S	R	L	R	P	F	L	L	A	S	A	L	A	S	G	L	L	I	L	A	M	A	W	L	P	P	F	I	L	V	L	L	I	R	V	L	A	G	V	A	S	A	G	M	L	I	F	G	S	T	L	I	M	Q	H	T	R	H	.	.	.
Query Conservation									.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.
Template Conservation
Template Sequence		N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T	F	P	R	V	F	T	F	K	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D
Template Known Secondary structure							T											S	T	T	T																	T		G	G	G	T														T	T													T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
			137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	P	F	V	L	A	A	L	F	S	G	V	G	I	G	I	A	L	G	N	E	Y	V	L	A	G	L	H	F	D	L	S	S	Q	T	L	W	Q	G	A	G	A	L	S	G	M	M	L	I	A	L	T	L	L	M	P	S	K	K	H	A	I	T	P	M	P	L	A	K	T	E	Q	Q	I	M
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A	E	S	R	N	E	D	Y	L	R	P
Template Known Secondary structure			T	B	S	S	S	T	T		T	B	T	T	B																	T		G	G	G																					T	T	T	S		S			G	G	G	G	G						S
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions