Job Description P04693 Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012 Rank 76 Aligned Residues 325 % Identity 11% Template d2hoxa1 SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like Resolution 1.40

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.																			.	.	.	.
Query SS confidence																										.	.	.																			.	.	.	.
Query Sequence		R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	.	.	.	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	.	.	.	.	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A
Query Conservation																										.	.	.																			.	.	.	.
Alig confidence												.	.	.	.	.	.	.								.	.	.																			.	.	.	.
Template Conservation												.	.	.	.	.	.	.
Template Sequence		Q	G	C	S	A	D	V	A	S	G	.	.	.	.	.	.	.	D	G	L	F	L	E	E	Y	W	K	Q	H	K	E	A	S	A	V	L	V	S	P	W	H	R	M	S	Y	F	F	N	P	V	S	N	F	I	S	F	E	L	E	K	T	I	K	E	L	H	E	V	V	G	N	A	A	A	K	D	R	Y	I	V
Template Known Secondary structure		T	T							S		.	.	.	.	.	.	.			G	G	G					T	T	S										T	T	T	T		S	S	S		S	S			T	T																	T		B			T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.								.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.									.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.
Query Sequence		T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	.	.	.	.	.	.	.	.	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T
Query Conservation																												.	.	.	.	.	.	.	.
Alig confidence			.	.																.	.							.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.																.	.																																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	.	.	G	V	G	V	T	Q	L	I	H	G	L	V	I	S	L	.	.	S	P	N	M	T	A	T	P	D	A	P	E	S	K	V	V	A	H	A	P	F	Y	P	V	F	R	E	Q	T	K	Y	F	D	K	K	G	Y	V	W	A	G	N	A	A	.	.	.	.	.	.	.	.	.	.	.	N	Y	V	N	V
Template Known Secondary structure			.	.		S														.	.	S			T	T	T		T	T	S									S	S												S			T	T							G	G	.	.	.	.	.	.	.	.	.	.	.	G	G	T	T
Template Predicted Secondary structure			.	.																.	.																																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		128			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.												.	.	190	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Sequence		S	N	P	E	Q	Y	I	E	M	V	T	S	P	N	N	P	E	G	L	L	R	H	.	.	.	.	.	.	.	.	.	.	A	V	I	K	G	C	K	S	I	Y	D	M	V	Y	Y	W	P	H	Y	T	P	.	.	.	.	.	.	.	.	.	I	K	Y	K	A	D	E	D	I	L	L	F	T	M	S	K	F	T
Template Known Secondary structure		S		G	G	G							S	S		T	T	T						.	.	.	.	.	.	.	.	.	.		S	S	T	T								T	T		S	T	T	T	S		.	.	.	.	.	.	.	.	.			S		B			S										T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.											.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.										.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.						.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.
Query Sequence		S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	.	.	.	.	.	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q
Query Conservation																																																											.	.	.	.	.
Alig confidence																.	.	.	.	.	.																																						.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence		G	H	S	G	S	R	F	G	W	A	L	I	K	D	.	.	.	.	.	.	E	S	V	Y	N	N	L	L	N	Y	M	T	K	N	T	E	G	T	P	R	E	T	Q	L	R	S	L	K	V	L	K	E	V	V	A	M	V	K	T	Q	K	G	T	M	R	D	L	N	T	F	G	F	K	K	L	R	E	R	W	V
Template Known Secondary structure		S		G	G	G										.	.	.	.	.	.															T	S	S																								T	T	S	T	T	S
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.							.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.												.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.										.	.	.	.	.	.	380	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.																						.	.	.																				.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.																						.	.	.																				.	.	.	.	.	.	.	.	.
Query Sequence		E	L	V	K	V	L	S	T	E	.	.	.	.	.	.	.	.	.	.	.	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	.	.	.	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	G	R	M	C	V	A	G	L
Query Conservation											.	.	.	.	.	.	.	.	.	.	.																						.	.	.																				.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.																						.	.	.																				.	.	.	.	.	.	.	.	.								.
Template Conservation																																																																																	.
Template Sequence		N	I	T	A	L	L	D	Q	S	D	R	F	S	Y	Q	E	L	P	Q	S	E	Y	C	N	Y	F	R	R	M	R	P	P	S	P	S	Y	A	W	V	K	C	E	W	E	E	D	K	D	C	Y	Q	T	F	Q	N	G	R	I	N	T	Q	N	G	V	G	F	E	A	S	S	R	Y	V	R	L	S	L	I	K	.
Template Known Secondary structure								T	T	S	S	S								S					T	T	T	T								S								S	G	G	G		S								T	T						G	G	G	G	T	S		T	T							S	S	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Q	D	D	F	D	Q	L	M	Y	Y	L	K	D	M	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions