76 d2hoxa1 Probab=100.00  E-value=2e-43  Score=267.96  Aligned_columns=325  Identities=11%

Q ss_pred             CCCCEEEECCCCCCCCCCCCCCHH---HHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCCCHHHEE
Q ss_conf             998466232654389998887368---999999986072436678----9988998999999999976278888821278
Q batch____        25 RSDKVNLSIGLYYNEDGIIPQLQA---VAEAEARLNAQPHGASLY----LPMEGLNCYRHAIAPLLFGADHPVLKQQRVA   97 (397)
Q Consensus        25 ~~~~i~l~~g~~~~~~~~~~~~~a---v~~a~~~~~~~~~~~~~Y----~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~   97 (397)
                      ....+|++.|       .|..++.   -......+.........|    ....+..+|++.+++..........++..++
T Consensus        55 ~~~~~~~~~g-------dp~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv  127 (425)
T d2hoxa1          55 QGCSADVASG-------DGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIV  127 (425)
T ss_dssp             TTCCEECCSC-------CCGGGHHHHTTSHHHHCCCCCTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEE
T ss_pred             CCCCCCCCCC-------CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             6554346678-------855463664114210001124555456545664344528999999999885088678877699


Q ss_pred             EEEECCHHHHHHHHHHHHHHCCCCCE--------EEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             99706837999999999985189978--------9985898455899999616756862411688886797899999874
Q batch____        98 TIQTLGGSGALKVGADFLKRYFPESG--------VWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKT  169 (397)
Q Consensus        98 v~~T~G~~~al~~~~~~l~~~~pGd~--------Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~l~~  169 (397)
                      +  |+|+++++++++..|  +.|||.        |+++.|+|+.|...+...|.++..++.+.+           .....
T Consensus       128 ~--t~G~~~~l~~a~~aL--~~pGd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~~~~~~~~d~~-----------~~~~~  192 (425)
T d2hoxa1         128 F--GVGVTQLIHGLVISL--SPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAA-----------NYVNV  192 (425)
T ss_dssp             E--ESHHHHHHHHHHHHH--SCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCCTTEEEEEEGG-----------GGTTC
T ss_pred             E--ECCHHHHHHHHHHHH--CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCHH-----------HHHHH
T ss_conf             9--468899999999986--48886123567743573002377899999855997444247988-----------99972


Q ss_pred             HCCCEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCCCCC
Q ss_conf             01881999847898871001438999999999975591599763512101587544303675124588289971263001
Q batch____       170 LPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF  249 (397)
Q Consensus       170 ~~~~~~~i~~~~~~NPTG~~~s~~~l~~i~~~a~~~~~~ii~Deay~~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~  249 (397)
                      ..+++.++++++||||||.+++          |+++++++|+||+|.++.+..         .....+++|+++||||.|
T Consensus       193 ~~~~~~~~~i~~P~NPtG~v~~----------a~~~~~~~i~De~y~~~~~~~---------~~~~~~~~i~~~S~SK~~  253 (425)
T d2hoxa1         193 SNPEQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTP---------IKYKADEDILLFTMSKFT  253 (425)
T ss_dssp             SCGGGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSC---------CCSCBCCSEEEEEHHHHT
T ss_pred             CCCCCEEEEECCCCCCCCEEEE----------EEECCCEEEEECCCCCCCCCC---------CCCCCCCEEEEEECCCCC
T ss_conf             4888579998178888560654----------232396899714323433233---------334568549998155101


Q ss_pred             CCCCHHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf             572011034630745489999999998863003446779899999999962976578-----899999999999999999
Q batch____       250 SLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKA-----SWLAEVEEMRTRILAMRQ  324 (397)
Q Consensus       250 ~~~G~RiG~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~r~  324 (397)
                      |++|+|+||++.++      ..+...+.........+++.+.|.++..+|++.....     ...++++..++.++++++
T Consensus       254 g~~GlRiG~~i~~~------~~i~~~l~~~~~~~~~~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~  327 (425)
T d2hoxa1         254 GHSGSRFGWALIKD------ESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWV  327 (425)
T ss_dssp             SCGGGCCEEEEECC------HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECC------HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             23323101899689------899999998641057773689999999996020134565555489999999999999999


Q ss_pred             HHHHHHHHC-----------CCCCCEEEECCCCCEEEECCC---CHHHHHHHHHHCCEEEECC---------CEEEECCC
Q ss_conf             999999970-----------887886997159730886289---9899999998479098188---------05985068
Q batch____       325 ELVKVLSTE-----------MPERNFDYLLNQRGMFSYTGL---SAAQVDRLREEFGVYLIAS---------GRMCVAGL  381 (397)
Q Consensus       325 ~l~~~L~~~-----------~~~~~~~~~~~~~g~f~~~~l---~~~~~~~Ll~e~~I~~~pg---------~Ris~a~l  381 (397)
                      .+.+.|.+.           +.-..+..+.+.+++|+|+++   ..+.+.++++++||.+.||         +|||++. 
T Consensus       328 ~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~~~~~~~~~lL~e~GI~v~pGs~FG~~~~~vRiSl~~-  406 (425)
T d2hoxa1         328 NITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK-  406 (425)
T ss_dssp             HHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS-
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECC-
T ss_conf             9999986357630034565543221001377876169986789808999999996694997170238988659999139-


Q ss_pred             CHHHHHHHHHHHHHHC
Q ss_conf             9999999999988719
Q batch____       382 NTANVQRVAKAFAAVM  397 (397)
Q Consensus       382 ~~~~i~~l~~ai~~vv  397 (397)
                      ++++++.++++|++.|
T Consensus       407 ~~e~ld~~l~rL~~~v  422 (425)
T d2hoxa1         407 TQDDFDQLMYYLKDMV  422 (425)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             9899999999999987