|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | |
. | . | 70 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|  |  | . |
|
|
|
|  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | T | N | L | F | V | R | S | G | I | S | F | V | D | R | S | E | V | L | T | H | I | G | N | E | M | L | A | K | G | V | V | H | D | T | W | P | Q | A | L | I | A | R | E | A | E | F | P | T | G | I | M | L | E | Q | H | A | I | A | I | P | H | C | E | A | I | H | . |
A | K | S | S | A | I | Y | L | L | R | P | T |
Query Conservation |   |
  |   |   |   |
|
|   |   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|   |   |   |   |   |
|   |
|
|
|   |   |   |   |
|   |
|   |   |   |   |   |   |
|
|
|
|
|   |   |   |   |   | . |
|   |   |   |   |
|   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |
|   |   |   |
| . |   |   |
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |   |
|   |
|   |   |
|
|
Template Sequence |   |
I | D | N | N | S | I | R | L | G | L | S | A | D | T | W | Q | E | A | V | R | L | A | V | Q | P | L | I | D | S | K | A | V | T | S | A | Y | Y | D | A | I | I | A | S | T | E | K | Y | G | P | Y | Y | V | L | . |
X | P | G | X | A | X | P | H | A | E | A | G | L | G | V | N | R | N | A | F | A | L | I | T | L | T |
Template Known Secondary structure |   |
 |  | T | T |
|  |  |  |  |  |
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | S | B |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | T | T |
|
| . | S | T |  |  |  |
|
|
|
|
|
| T | T | T | B | S | S |
|  |  |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
| . |
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . |
  |
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | |
. | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | |
. | . | . | . | . | 140 | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | K | V | H | F | Q | Q | A | D | D | D | N | D | V | A | V | S | L | V | I | A | L | I | V | E | N | P | Q | Q | Q | L | K | L | . |
L | R | C | L | F | G | K | L | Q | Q | P | D | I | V | E | T | L | I | T | L | P | E | . |
T | Q | L | K | E | Y | F | T | K | Y |
Query Conservation |   |
  |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   | . |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   | . |   |
|   |   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |   |   |   | . | . | . | . | . |   |
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
Template Sequence |   |
K | P | V | T | F | S | D | G | K | . |
. |
. |
. |
. |
E | V | S | V | L | L | T | L | A | A | T | D | P | S | I | H | T | T | V | A | I | P | Q | I | V | A | L | F | E | L | D | N | A | I | E | R | L | V | A | C | Q | S | P | K | E | V | L | E | X | V | E | E | S |
Template Known Secondary structure |   |
 |  |  |  |
| T | T | S |
| . | . | . | . | . |  |  |  |  |  |
|
|  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | T | T |  |  |  |  |  |  | T |
|
| S |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |
|
|
|
|
| . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
87 | . | . | 90 | . | . | . | . | . | |
|
|
|
|
. | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . |
  |