Return to main results Retrieve Phyre Job Id

Job DescriptionP09831
Confidence99.67%DateWed Jan 25 15:20:14 GMT 2012
Rank34Aligned Residues285
% Identity19%Templated1vcfa1
SCOP infoTIM beta/alpha-barrel FMN-linked oxidoreductases FMN-linked oxidoreductases
Resolution2.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   834.....840.. .......850.... .....860.........870.........880.........890.........900.......
Predicted Secondary structure 





.




.....




























Query SS confidence 








.











. . . . .




















































Query Sequence  LAITPGENA. VNIADVEPASEL. . . . . FKRFDTAAMSIGALSPEAHEALAEAMNSIGGNSNSGEGGEDPARYGTNKVSRI
Query Conservation 


     
.







   
..... 


 

 

 



  
  


 
    
  
 





 
          
Alig confidence 








.











.....











..






































Template Conservation    
 
  
       




   
  
  

 
 
    ..       

  
   

                      
Template Sequence  FRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAXTEN. . GERINLALAEAAEALGVGXXLGSGRILLERPEALRSFRV
Template Known Secondary structure 


TT



GGG



TTSSS





..T


TTT

Template Predicted Secondary structure 























..














Template SS confidence 















































































   31........40.........50.........60......... 70.........80.........90.........100........
 
   908.910.........920.........930.........940.........950.........960.........970.........980.......
Predicted Secondary structure 















































Query SS confidence 















































































Query Sequence  KQVASGRFGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDL
Query Conservation   








    
  
  



 









 


 

   

  
   


 



















  
Alig confidence 







............





















..



































Template Conservation          ............    
                 ..                                    
Template Sequence  RKVAPKAL. . . . . . . . . . . . LIANLGLAQLRRYGRDDLLRLV. . EXLEADALAFHVNPLQEAVQRGDTDFRGLVERLAEL
Template Known Secondary structure  TTT
SSS
............GGGGGT

..T
S

TTS



TT
Template Predicted Secondary structure 



............








..



















Template SS confidence 















































































   112....... 120.........130.........140. ........150.........160.........170.......
 
   988.990.........1000.........1010.........1020.........1030.........1040.........1050.........1060.......
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  KQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGTGASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRL
Query Conservation 
  
  
 
 



   





 




 

 
 


 






   
 
  
 
 
 

 
    
   


  
 
Alig confidence 


..




































....

































Template Conservation     ..  

 

        
 
  
   




 


 

 ....                
    
         
 
Template Sequence  LPL. . PFPVXVKEVGHGLSREAALALRDLPLAAVDVAGAGGT. . . . SWARVEEWVELCEIGIPTARAILEVREVLPHLPL
Template Known Secondary structure 
S
..SS

SSS


TTS

S


BTS
....
T


TT
S
B
SSS
Template Predicted Secondary structure 

..

















....




















Template SS confidence 















































































   178.180 .........190.........200.........210....... ..220.........230.........240.........250.
 
   1068.1070.........1080.........1090.........1100.........1110.........1120.........1130.........1140.......
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  QVDGGLKTGVDIIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYFEFIARET
Query Conservation    


  
  

  
  


     

  


 



 
 

   







   
      
    

        
 
Alig confidence 
































.............................

















Template Conservation 
 




 
 

 






  
 


      .............................  
  

   
  
  

Template Sequence  VASGGVYTGTDGAKALALGADLLAVARPLLRPA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . LEGAERVAAWIGDYLEEL
Template Known Secondary structure  SS

ST
S
GGG.............................TT
Template Predicted Secondary structure 







.............................

Template SS confidence 















































































   260.........270.........280.........290.. .......300.........310
 
   1148.1150.........1160.........
Predicted Secondary structure 





Query SS confidence 





















Query Sequence  RELMAQLGVTRLVDLIGRTDLL
Query Conservation 
 
 
 

  
  
 


 


Alig confidence 





















Template Conservation     
 
 
   
 

       
Template Sequence  RTALFAIGARNPKEARGRVERV
Template Known Secondary structure  T
SSGGGGTT

Template Predicted Secondary structure 





Template SS confidence 





















   311........320.........330..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions