 |
Job Description | P09831 | Confidence | 55.30% | Date | Wed Jan 25 15:20:14 GMT 2012 |
Rank | 191 | Aligned Residues | 141 |
% Identity | 13% | Template | d1riqa1 |
SCOP info | Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
| Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
| Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
|
Resolution | 2.14 |
|
 |
  |   |
637 | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | |
. | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | |
|
. | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | |
|
|
710 |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
| . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
Query Sequence |   |
R | L | V | D | Q | S | L | R | C | D | A | N | I | I | V | E | T | A | S | A | R | D | . |
P | H | H | F | A | V | L | L | G | F | G | A | T | A | I | Y | P | Y | L | . |
. |
A | Y | E | T | L | G | R | L | V | D | T | H | A | I | A | K | D | Y | R | T | V | M | L | N | Y | R | N | G | I | N | K | G | . |
. |
. |
L |
Query Conservation |   |
  |
|
|
|   |
|
|
|   |   |   |
|
|
|
|
|
|
|
|   |
|   | . |   |
|
|   |
|   |
|
|
|
|
|
|   |
|
|   |
|
|
| . | . |
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |
|
| . | . | . |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
Template Conservation |   |
|
|
|
|
|
|
|
|
|
|   |
|   |   |   |   |
|
|   |   |   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|
|
|
|   |   |   |   |   |   |
|   |   |
| . | . | . | . | . | . | . | . | . |
|   |   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |
|
Template Sequence |   |
Y | V | I | R | R | I | L | R | R | A | X | R | F | G | Y | K | L | G | I | E | N | P | F | L | Y | K | G | V | D | L | V | V | D | I | X | K | E | P | Y | P | E | L | E | L | S | R | E | F | V | K | G | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
V | K | G | E | E | K | R | F | I | K | T | L | K | A | G | X | E | Y | I |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| T | T |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
293 | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . |
  |
  |   |
711 | . | . | . | . | . | . | |
|
|
. | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  | . | . | . |
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | K | I | M | S | K | M | . |
. |
. |
G | I | S | T | I | A | S | Y | R | C | S | K | L | F | E | A | V | G | L | H | D | D | V | V | G | L | C | F | Q | G | A | V | S | R | I | G | G | A | S | F | E | D | F | Q | Q | D | L | L | N | L | S | K | R | A | W | L | A | R | K | P | I | S | Q | G | G | L | L | K | Y |
Query Conservation |   |
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|   |
|
|   |
|
|
|
|
|
|
|
|
|
|   |   |
|
|
|   |   |   |
|   |
|
|   |
|   |
|
|
|   |   |   |   |   |
|
|   |
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|   |
|
|
|
|
|
|
|
|   |
|
|
|   |   |
|
|   |
|   |
|
|   |
|
|   |   |
|
|   |   |   |
|
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
Template Sequence |   |
Q | E | V | I | Q | K | A | L | E | E | G | R | K | T | L | S | G | K | E | V | F | T | A | Y | D | T | Y | G | F | P | V | D | L | I | D | E | I | A | R | E | K | G | L | G | I | D | L | E | G | F | Q | C | E | L | E | E | Q | R | E | R | A | R | K | H | P | V | Y | S | H | L | K | E | L | G | K | T | S | A | F |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |
|
|  |  |
|  |  |  |  |  |  |  |  |  | T | S |
|
|
|  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|
|
|
|
|
| T | T | S |  |  |  |  | T | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
364 | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|