Job Description P09831 Confidence 99.82% Date Wed Jan 25 15:20:14 GMT 2012 Rank 19 Aligned Residues 322 % Identity 16% Template d1p4ca_ SCOP info TIM beta/alpha-barrel FMN-linked oxidoreductases FMN-linked oxidoreductases Resolution 1.35

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		796	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.				.	830	.	.	.	.	.	.	.	.		.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.						.	.	.	860	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.											.																			.	.	.	.	.
Query SS confidence																																			.	.	.											.																			.	.	.	.	.
Query Sequence		N	P	D	V	V	R	T	L	Q	Q	A	V	Q	S	G	E	Y	S	D	Y	Q	E	Y	A	K	L	V	N	E	R	P	A	T	.	.	.	T	L	R	D	L	L	A	I	T	P	.	G	E	N	A	V	N	I	A	D	V	E	P	A	S	E	L	F	K	.	.	.	.	.	R	F	D	T	A	A	M	S	I	G
Query Conservation																																			.	.	.											.																			.	.	.	.	.
Alig confidence																																			.	.	.											.																			.	.	.	.	.
Template Conservation
Template Sequence		N	L	F	N	V	E	D	Y	R	K	L	A	Q	K	R	L	P	K	M	V	Y	D	Y	L	E	G	G	A	E	D	E	Y	G	V	K	H	N	R	D	V	F	Q	Q	W	R	F	K	P	K	R	L	V	D	V	S	R	R	S	L	Q	A	E	V	L	G	K	R	Q	S	M	P	L	L	I	G	P	T	G	L	N
Template Known Secondary structure				S	S												S												S	T	T										G	G	G	G								S				S	S		B						T	T				S	S	S							S		G
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		867	.	.	870		.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.			.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.
Predicted Secondary structure						.																											.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.																											.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	S	P	.	E	A	H	E	A	L	A	E	A	M	N	S	I	G	G	N	S	N	S	G	E	G	G	E	D	P	.	.	A	R	Y	G	T	N	K	V	S	R	I	K	Q	V	A	S	G	R	F	G	V	T	P	A	Y	L	V	N	A	D	V	I	Q	I	K	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.																											.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																											.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	L	W	P	K	G	D	L	A	L	A	R	A	A	T	K	A	G	I	P	F	V	L	S	T	A	S	N	M	S	I	E	D	L	A	R	Q	C	D	G	D	L	W	F	Q	L	Y	V	I	H	R	E	I	A	Q	G	M	V	L	K	A	L	H	T	G	Y	T	T	L	V	L	T	T	D	V	A	V	N	G
Template Known Secondary structure		G	G	T	S	T	T													T							T	T		S	S											S									S	S														T	T									S		S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
							932	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	V	A	Q	G	A	K	P	G	E	G	G	Q	L	P	G	D	K	V	T	P	Y	I	A	K	L	R	Y	S	V	P	G	V	T	L	I	S	P	P	P	H	H	D	I	Y	S	I	E	D	L	A	Q	L	I	F	D	L	K	Q	V	N	P	K	A	M	I	S	V	K	L	V	S	E	P	G	V
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																																	.	.	.	.												.					.	.	.
Template Conservation																																																							.	.	.	.												.					.	.	.
Template Sequence		Y	R	E	R	D	L	H	N	R	F	K	I	P	P	F	L	T	L	K	N	F	E	G	I	D	L	G	K	M	D	K	A	N	L	E	M	Q	A	A	L	M	S	R	Q	M	D	A	S	F	N	W	E	A	.	.	.	.	L	R	W	L	R	D	L	W	P	H	K	.	L	L	V	K	.	.	.	G	L	L	S
Template Known Secondary structure										T					T	T				G	G	G	T	T				S			S	S	T	T	T	T	T					T	S	S				T	T						.	.	.	.										S		.					.	.	.
Template Predicted Secondary structure																																																							.	.	.	.												.					.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.		.	.	230	.				.	.	.	.
		1007	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	I	A	T	G	V	A	K	A	Y	A	D	L	I	T	I	A	G	Y	D	G	G	T	G	A	S	P	L	S	S	V	K	Y	A	G	C	P	W	E	L	G	L	V	E	T	Q	Q	A	L	V	A	N	G	L	R	H	K	I	R	L	Q	V	D	G	G	L	K	T	G	V	D	I	I	K	A	A	I	L	G
Query Conservation
Alig confidence																						.						.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation																						.						.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Sequence		A	E	D	A	D	R	C	I	A	E	G	A	D	G	V	I	L	S	N	H	.	G	G	R	Q	L	.	.	.	.	.	.	.	D	C	A	I	S	P	M	E	V	L	A	Q	S	V	A	K	T	.	.	.	.	.	.	.	G	K	P	V	L	I	D	S	G	F	R	R	G	S	D	I	V	K	A	L	A	L	G
Template Known Secondary structure											T	T		S							G	.	G	G	T	S		.	.	.	.	.	.	.	T	T				G	G	G	T									.	.	.	.	.	.	.		S						S	S			S										T	T
Template Predicted Secondary structure																						.						.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260								.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.								.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		1087	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	S	F	G	F	G	T	G	P	M	V	A	L	G	C	K	Y	L	R	I	C	H	L	N	N	C	A	T	G	V	A	T	Q	D	D	K	L	R	K	N	H	Y	H	G	L	P	F	K	V	T	N	Y	F	E	F	I	A	R	E	T	R	E	L	M	A	Q	L	G	V	T	R	L	V	D	L	I	G	R	T
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Sequence		A	E	A	V	L	L	G	R	A	T	L	Y	G	L	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	E	T	G	V	D	E	V	L	T	L	L	K	A	D	I	D	R	T	L	A	Q	I	G	C	P	D	I	T	S	L	.	.	S	P
Template Known Secondary structure			S					S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									T			B	G	G	G		.	.		G
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.																													.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350
		1167	.	.	1170
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Y	L	Q
Template Known Secondary structure		G	G
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions