Job Description P09831 Confidence 99.81% Date Wed Jan 25 15:20:14 GMT 2012 Rank 20 Aligned Residues 336 % Identity 19% Template d1kbia1 SCOP info TIM beta/alpha-barrel FMN-linked oxidoreductases FMN-linked oxidoreductases Resolution 2.30

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		793	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.				.	830	.	.	.	.	.	.	.	.		.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.						.	.	860	.	.	.
Predicted Secondary structure																																						.	.	.											.																				.	.	.	.	.
Query SS confidence																																						.	.	.											.																				.	.	.	.	.
Query Sequence		H	A	Y	N	P	D	V	V	R	T	L	Q	Q	A	V	Q	S	G	E	Y	S	D	Y	Q	E	Y	A	K	L	V	N	E	R	P	A	T	.	.	.	T	L	R	D	L	L	A	I	T	P	.	G	E	N	A	V	N	I	A	D	V	E	P	A	S	E	L	F	K	R	.	.	.	.	.	F	D	T	A	A	M
Query Conservation																																						.	.	.											.																				.	.	.	.	.
Alig confidence																																						.	.	.											.																				.	.	.	.	.
Template Conservation
Template Sequence		P	L	D	N	I	I	N	L	Y	D	F	E	Y	L	A	S	Q	T	L	T	K	Q	A	W	A	Y	Y	S	S	G	A	N	D	E	V	T	H	R	E	N	H	N	A	Y	H	R	I	F	F	K	P	K	I	L	V	D	V	R	K	V	D	I	S	T	D	M	L	G	S	H	V	D	V	P	F	Y	V	S	A	T
Template Known Secondary structure			G	G	G			S												S												S	T	T										G	G	G	G								S				S	S		B						T	T				S	S	S
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		864	.	.	.	.	.	870					.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.						.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.		.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.
Predicted Secondary structure									.	.	.	.																											.	.	.	.	.																				.
Query SS confidence									.	.	.	.																											.	.	.	.	.																				.
Query Sequence		S	I	G	A	L	S	P	.	.	.	.	E	A	H	E	A	L	A	E	A	M	N	S	I	G	G	N	S	N	S	G	E	G	G	E	D	P	.	.	.	.	.	A	R	Y	G	T	N	K	V	S	R	I	K	Q	V	A	S	G	R	F	.	G	V	T	P	A	Y	L	V	N	A	D	V	I	Q	I	K	V	A
Query Conservation									.	.	.	.																											.	.	.	.	.																				.
Alig confidence									.	.	.	.																											.	.	.	.	.																				.															.	.	.
Template Conservation																																																																														.	.	.
Template Sequence		A	L	C	K	L	G	N	P	L	E	G	E	K	D	V	A	R	G	C	G	Q	G	V	T	K	V	P	Q	M	I	S	T	L	A	S	C	S	P	E	E	I	I	E	A	A	P	S	D	K	Q	I	Q	W	Y	Q	L	Y	V	N	S	D	R	K	I	T	D	D	L	V	K	N	V	E	K	L	G	.	.	.	V
Template Known Secondary structure		S		G	G	G	T		T	T	T	T										S	S	S	S								T	T		S	S								T				S	S											S	S															T	.	.	.
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.				.
		934	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.				.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		Q	G	A	K	P	G	E	G	G	Q	L	P	G	D	K	V	T	P	Y	I	A	K	L	R	Y	S	V	P	G	V	T	L	I	S	P	P	P	H	H	D	I	Y	S	I	E	D	L	A	.	.	.	Q	L	I	F	D	L	K	Q	V	N	P	K	A	M	I	S	V	K	L	V	S	E	P	G	V	G	T	I	A
Query Conservation																																																		.	.	.
Alig confidence																																																		.	.	.														.							.	.	.
Template Conservation																																																																		.							.	.	.
Template Sequence		K	A	L	F	V	T	V	D	A	P	S	L	G	Q	R	E	K	D	M	K	L	K	F	S	N	T	K	K	T	N	V	E	E	S	Q	G	A	S	R	A	L	S	K	F	I	D	P	S	L	T	W	K	D	I	E	E	L	K	K	K	T	K	L	P	.	I	V	I	K	G	V	.	.	.	Q	R	T	E	D	V
Template Known Secondary structure		S							S		S	S													T	T							S	S				G	G	G	G		B	T	T	B		T	T														S	S		.							.	.	.		S
Template Predicted Secondary structure																																																																		.							.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.				.	.	.	.	.	350
		1011	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	V	A	K	A	Y	A	D	L	I	T	I	A	G	Y	D	G	G	T	G	A	S	P	L	S	S	V	K	Y	A	G	C	P	W	E	L	G	L	V	E	T	Q	Q	A	L	V	A	N	G	L	R	H	K	I	R	L	Q	V	D	G	G	L	K	T	G	V	D	I	I	K	A	A	I	L	G	A	E	S	F
Query Conservation
Alig confidence																		.								.	.	.	.	.	.	.
Template Conservation																		.								.	.	.	.	.	.	.
Template Sequence		I	K	A	A	E	I	G	V	S	G	V	V	L	S	N	H	.	G	G	R	Q	L	D	F	.	.	.	.	.	.	.	S	R	A	P	I	E	V	L	A	E	T	M	P	I	L	E	Q	R	N	L	K	D	K	L	E	V	F	V	D	G	G	V	R	R	G	T	D	V	L	K	A	L	C	L	G	A	K	G	V
Template Known Secondary structure							T	T		S							T	.	T	T	T	S	S	T	T	.	.	.	.	.	.	.																	T	T	T		B	T	T	B						S	S			S											T		S
Template Predicted Secondary structure																		.								.	.	.	.	.	.	.
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380								.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
		1091	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	G	T	G	P	M	V	A	L	G	C	K	Y	L	R	I	C	H	L	N	N	C	A	T	G	V	A	T	Q	D	D	K	L	R	K	N	H	Y	H	G	L	P	F	K	V	T	N	Y	F	E	F	I	A	R	E	T	R	E	L	M	A	Q	L	G	V	T	R	L	V	D	L	I	G	R	T	D	L	L	K
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Sequence		G	L	G	R	P	F	L	Y	A	N	S	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	R	N	G	V	E	K	A	I	E	I	L	R	D	E	I	E	M	S	M	R	L	L	G	V	T	S	I	A	E	L	.	.	K	P	D	L	L	D
Template Known Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									T			B	G	G	G		.	.		G	G	G
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template SS confidence
		430	.	.	.	.	.	.	.	.	.	440	.																													.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.			.	.	.	.	.	.
		1171	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	T
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		480	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions