Job Description P09831 Confidence 99.66% Date Wed Jan 25 15:20:14 GMT 2012 Rank 35 Aligned Residues 272 % Identity 22% Template c1kbiB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome b2; PDBTitle: crystallographic study of the recombinant flavin-binding domain of2 baker's yeast flavocytochrome b2: comparison with the intact wild-3 type enzyme Resolution 2.30 Å

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		857	.	.	860	.	.	.	.	.	.	.	.	.	870					.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.						.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910		.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.																								.	.	.	.	.																		.
Query SS confidence																.	.	.	.																								.	.	.	.	.																		.
Query Sequence		R	F	D	T	A	A	M	S	I	G	A	L	S	P	.	.	.	.	E	A	H	E	A	L	A	E	A	M	N	S	I	G	G	N	S	N	S	G	E	G	G	.	.	.	.	.	E	D	P	A	R	Y	G	T	N	K	V	S	R	I	K	Q	V	.	A	S	G	R	F	G	V	T	P	A	Y	L	V	N	A	D
Query Conservation																.	.	.	.																								.	.	.	.	.																		.
Alig confidence																.	.	.	.																								.	.	.	.	.																		.
Template Conservation
Template Sequence		P	F	Y	V	S	A	T	A	L	C	K	L	G	N	P	L	E	G	E	K	D	V	A	R	G	C	G	Q	G	V	T	K	V	P	Q	M	I	S	T	L	A	S	C	S	P	E	E	I	I	E	A	A	P	S	D	K	Q	I	Q	W	Y	Q	L	Y	V	N	S	D	R	K	I	T	D	D	L	V	K	N	V	E
Template Known Secondary structure		S							S		G	G	G	T	S	T	T	T	T										S	S	S	S								T	T		S	S										S		S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		927	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.			980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		V	I	Q	I	K	V	A	Q	G	A	K	P	G	E	G	G	Q	L	P	G	D	K	V	T	P	Y	I	A	K	L	R	Y	S	V	P	G	V	T	L	I	S	P	P	P	H	H	D	I	Y	S	I	E	D	.	.	L	A	Q	L	I	F	D	L	K	Q	V	N	P	K	A	M	I	S	V	K	L	V	S	E	P
Query Conservation																																																							.	.
Alig confidence										.	.	.																																											.	.																.							.	.	.
Template Conservation										.	.	.																																																												.							.	.	.
Template Sequence		K	L	G	V	K	A	L	F	.	.	.	V	T	V	D	A	P	S	L	G	Q	R	E	K	D	M	K	L	K	F	S	N	T	K	T	N	V	E	E	S	Q	G	A	S	R	A	L	S	K	F	I	D	P	S	L	T	W	K	D	I	E	E	L	K	K	K	T	K	L	P	.	I	V	I	K	G	V	.	.	.
Template Known Secondary structure				T						.	.	.				S		S	S													T	T				S		S	S		S	G	G	G	G	G			S	S	S		T	T												T			S		.							.	.	.
Template Predicted Secondary structure										.	.	.																																																												.							.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.
		1005	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	G	T	I	A	T	G	V	A	K	A	Y	A	D	L	I	T	I	A	G	Y	D	G	G	T	G	A	S	P	L	S	S	V	K	Y	A	G	C	P	W	E	L	G	L	V	E	T	Q	Q	A	L	V	A	N	G	L	R	H	K	I	R	L	Q	V	D	G	G	L	K	T	G	V	D	I	I	K	A	A	I
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.
Template Sequence		Q	R	T	E	D	V	I	K	A	A	E	I	G	V	S	G	V	V	L	S	N	H	G	G	R	Q	L	D	.	.	.	.	.	.	.	.	F	S	R	A	P	I	E	V	L	A	E	T	M	P	I	L	E	Q	R	N	L	K	D	K	L	E	V	F	V	D	G	G	V	R	R	G	T	D	V	L	K	A	L	C
Template Known Secondary structure			S										T	T		S							T	T	T	T	S	S	T	.	.	.	.	.	.	.	.	T																	T	T	T	G	G	G	T	S						S	S			S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.									380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		1085	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	A	E	S	F	G	F	G	T	G	P	M	V	A	L	G	C	K	Y	L	R	I	C	H	L	N	N	C	A	T	G	V	A	T	Q	D	D	K	L	R	K	N	H	Y	H	G	L	P	F	K	V	T	N	Y	F	E	F	I	A	R	E	T	R	E	L	M	A	Q	L	G	V	T	R	L	V	D	L	I	G
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Sequence		L	G	A	K	G	V	G	L	G	R	P	F	L	Y	A	N	S	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	R	N	G	V	E	K	A	I	E	I	L	R	D	E	I	E	M	S	M	R	L	L	G	V	T	S	I	A	E	L	.	.
Template Known Secondary structure			T		S															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									T			B	G	G	G		.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.																													.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		1165	.	.	.	.	1170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	D	L	L	K	E	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P	D	L	L	D	L	S	T
Template Known Secondary structure			G	G	G				T	T
Template Predicted Secondary structure
Template SS confidence
		474	.	.	.	.	.	480	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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