Job Description P09831 Confidence 95.07% Date Wed Jan 25 15:20:14 GMT 2012 Rank 95 Aligned Residues 127 % Identity 17% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		976	.	.	.					980	.	.	.	.	.	.	.	.	.	990		.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.											.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040
Predicted Secondary structure						.	.	.	.												.																	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.												.																	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	E	D	.	.	.	.	L	A	Q	L	I	F	D	L	K	Q	V	.	N	P	K	A	M	I	S	V	K	L	V	S	E	P	G	V	.	.	.	.	.	.	.	.	.	.	G	T	I	A	T	G	V	A	K	A	Y	A	D	L	I	T	I	A	G	Y	D	G	G	T	G	A	S	P	L	S	S	V	K	Y
Query Conservation						.	.	.	.												.																	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.												.																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C	A	I	A	T	R	F	G	V	D	T	V	Y	G	P	G	Q	I	E	A	E	V	D	G	Q	K	F	V	E	M	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F
Template Known Secondary structure		S																				T	T	T	S											S	S		T	T	S			T	T	T										T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		1041	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.		.	.	.	1090	.	.	.	.	.	.	.									.	.	1100	.								.	.	.
Predicted Secondary structure																																																.												.	.	.	.	.	.	.	.					.	.	.	.	.	.	.
Query SS confidence																																																.												.	.	.	.	.	.	.	.					.	.	.	.	.	.	.
Query Sequence		A	G	C	P	W	E	L	G	L	V	E	T	Q	Q	A	L	V	A	N	G	L	R	H	K	I	R	L	Q	V	D	G	G	L	K	T	G	V	D	I	I	K	A	A	I	L	G	.	A	E	S	F	G	F	G	T	G	P	M	.	.	.	.	.	.	.	.	V	A	L	G	.	.	.	.	.	.	.	C	K	Y
Query Conservation																																																.												.	.	.	.	.	.	.	.					.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.																							.												.	.	.	.	.	.	.	.					.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.
Template Sequence		Y	Q	Q	G	H	T	I	P	W	V	K	L	V	K	Q	V	S	K	.	.	.	.	.	.	K	P	V	L	G	V	G	R	Y	T	D	P	E	K	M	I	E	I	V	T	K	G	Y	A	D	I	I	G	C	A	R	P	S	I	A	D	P	F	L	P	Q	K	V	E	Q	G	R	Y	D	D	I	R	V	C	I	G
Template Known Secondary structure				T	T	T	T									T	T		S	.	.	.	.	.	.	S						S														T	T	S		S	B				S							T	T							T	T		G	G	G
Template Predicted Secondary structure																				.	.	.	.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.							.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		1105	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	I	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	N	V	C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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