Job Description P77733 Confidence 31.98% Date Thu Jan 5 12:32:15 GMT 2012 Rank 17 Aligned Residues 167 % Identity 11% Template c2f2bA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:aquaporin aqpm; PDBTitle: crystal structure of integral membrane protein aquaporin aqpm at 1.68a2 resolution Resolution 1.68 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.													.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.
Predicted Secondary structure																.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Query SS confidence																.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Query Sequence		S	K	V	S	V	F	L	M	A	M	S	A	G	V	.	.	.	F	M	A	I	G	F	T	F	Y	L	S	V	I	A	D	A	P	S	S	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	L	T	H	L	V	G	G	L	C	F	T	L	G	F	I	L	L	A	V	C	G	T	S	L	F	T	S	.	.	S
Query Conservation																.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Alig confidence																.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation
Template Sequence		S	L	T	K	R	C	I	A	E	F	I	G	T	F	I	L	V	F	F	G	A	G	S	A	A	V	T	L	M	I	A	S	G	G	T	S	P	N	P	F	N	I	G	I	G	L	L	G	G	L	G	D	W	V	A	I	G	L	A	F	G	F	A	I	A	A	S	I	Y	A	L	G	N	I	S	G	C	H	I	N
Template Known Secondary structure																																	T	T				S	S	T	T			S	T	T	T	T	T	T																							T	T	T	T					S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		93	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		V	M	T	V	M	A	.	K	S	R	G	V	I	S	W	R	T	W	L	I	N	A	L	L	V	A	C	G	N	L	A	G	I	A	C	F	S	L	L	I	W	F	S	G	L	V	M	S	E	N	A	M	W	G	V	A	V	L	H	C	A	E	G	K	M	H	H	T	F	T	E	S	V	S	L	G	I	M	C	N
Query Conservation								.
Alig confidence								.																																		.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.
Template Sequence		P	A	V	T	I	G	L	W	S	V	K	K	F	P	G	R	E	V	V	P	Y	I	I	A	Q	L	L	G	A	A	F	G	S	F	I	F	L	Q	C	A	.	.	.	.	.	.	.	.	G	I	G	A	A	T	V	G	G	L	G	A	T	A	P	F	P	G	I	S	Y	W	Q	A	M	L	A	E	V	V	G	T
Template Known Secondary structure											T	T	S	S		G	G	G																								.	.	.	.	.	.	.	.		T					T	T	G	G	G						T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.									.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	V	C	L	A	L	W	M	S	Y	C	G	R	S	L	C	D	K	I	V	A	M	I	L	P	I	T	L	F	V	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	L	M	I	T	I	M	G	I	A	V	D	E	R	A	P	K	G	F	A	G	I	I	I	G	L	T	V	A	G	I	I
Template Known Secondary structure												T	T	S	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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